Gene : Pp3c3_22200 P. patens v3.3
Defline:  (1 of 9) PTHR21736 - VERNALIZATION-INSENSITIVE PROTEIN 3 Genomic Order:  1031
Name:  ? Pp3c3_22200 Secondary Identifier:  ? PAC:32943776
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c3_22200 0.5kb upstream 0.5kb upstream 8729 true Chr03: 15196293-15205021 Physcomitrium patens
Pp3c3_22200 0.5kb upstream 0.5kb upstream 500 false Chr03: 15204522-15205021 Physcomitrium patens
Pp3c3_22200 0.5kb downstream 0.5kb downstream 8729 true Chr03: 15195793-15204521 Physcomitrium patens
Pp3c3_22200 0.5kb downstream 0.5kb downstream 500 false Chr03: 15195793-15196292 Physcomitrium patens
Pp3c3_22200 1.0kb upstream 1.0kb upstream 9229 true Chr03: 15196293-15205521 Physcomitrium patens
Pp3c3_22200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 15204522-15205521 Physcomitrium patens
Pp3c3_22200 1.0kb downstream 1.0kb downstream 9229 true Chr03: 15195293-15204521 Physcomitrium patens
Pp3c3_22200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 15195293-15196292 Physcomitrium patens
Pp3c3_22200 2.0kb upstream 2.0kb upstream 10229 true Chr03: 15196293-15206521 Physcomitrium patens
Pp3c3_22200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 15204522-15206521 Physcomitrium patens
Pp3c3_22200 2.0kb downstream 2.0kb downstream 10229 true Chr03: 15194293-15204521 Physcomitrium patens
Pp3c3_22200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 15194293-15196292 Physcomitrium patens
Pp3c3_22200 5.0kb upstream 5.0kb upstream 13229 true Chr03: 15196293-15209521 Physcomitrium patens
Pp3c3_22200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 15204522-15209521 Physcomitrium patens
Pp3c3_22200 5.0kb downstream 5.0kb downstream 13229 true Chr03: 15191293-15204521 Physcomitrium patens
Pp3c3_22200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 15191293-15196292 Physcomitrium patens
Pp3c3_22200 10.0kb upstream 10.0kb upstream 18229 true Chr03: 15196293-15214521 Physcomitrium patens
Pp3c3_22200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 15204522-15214521 Physcomitrium patens
Pp3c3_22200 10.0kb downstream 10.0kb downstream 18229 true Chr03: 15186293-15204521 Physcomitrium patens
Pp3c3_22200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 15186293-15196292 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344783 5274 Embryophyte View MSA
123426997 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.245        
cufflinks 0.224        
cufflinks 0.388        
cufflinks 0.299        
cufflinks 0.254        
cufflinks 0.145       Low
cufflinks 0.084       Low
cufflinks 0.356        
cufflinks 0.316        
cufflinks 0.238        
cufflinks 0.067       Low
cufflinks 0.235        
cufflinks 0.346        
cufflinks 0.337        
cufflinks 0.154       Low
cufflinks 0.414        
cufflinks 0.459       High
cufflinks 0.308        
cufflinks 0.416        
cufflinks 0.183        
cufflinks 0.299        
cufflinks 0.518       High
cufflinks 0.374        
cufflinks 0.277        
cufflinks 0.38        
cufflinks 0.197        
cufflinks 0.317        
cufflinks 0.221        
cufflinks 0.4        
cufflinks 0.283        

0 Strain