Gene : Pp3c3_3090 P. patens v3.3
Defline:  (1 of 1) PTHR11700:SF7 - 40S RIBOSOMAL PROTEIN S10, MITOCHONDRIAL Genomic Order:  159
Name:  ? Pp3c3_3090 Secondary Identifier:  ? PAC:32943900
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c3_3090 0.5kb upstream 0.5kb upstream 2895 true Chr03: 1786685-1789579 Physcomitrium patens
Pp3c3_3090 0.5kb upstream 0.5kb upstream 500 false Chr03: 1786685-1787184 Physcomitrium patens
Pp3c3_3090 0.5kb downstream 0.5kb downstream 2895 true Chr03: 1787185-1790079 Physcomitrium patens
Pp3c3_3090 0.5kb downstream 0.5kb downstream 500 false Chr03: 1789580-1790079 Physcomitrium patens
Pp3c3_3090 1.0kb upstream 1.0kb upstream 3395 true Chr03: 1786185-1789579 Physcomitrium patens
Pp3c3_3090 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1786185-1787184 Physcomitrium patens
Pp3c3_3090 1.0kb downstream 1.0kb downstream 3395 true Chr03: 1787185-1790579 Physcomitrium patens
Pp3c3_3090 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1789580-1790579 Physcomitrium patens
Pp3c3_3090 2.0kb upstream 2.0kb upstream 4395 true Chr03: 1785185-1789579 Physcomitrium patens
Pp3c3_3090 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1785185-1787184 Physcomitrium patens
Pp3c3_3090 2.0kb downstream 2.0kb downstream 4395 true Chr03: 1787185-1791579 Physcomitrium patens
Pp3c3_3090 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1789580-1791579 Physcomitrium patens
Pp3c3_3090 5.0kb upstream 5.0kb upstream 7395 true Chr03: 1782185-1789579 Physcomitrium patens
Pp3c3_3090 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1782185-1787184 Physcomitrium patens
Pp3c3_3090 5.0kb downstream 5.0kb downstream 7395 true Chr03: 1787185-1794579 Physcomitrium patens
Pp3c3_3090 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1789580-1794579 Physcomitrium patens
Pp3c3_3090 10.0kb upstream 10.0kb upstream 12395 true Chr03: 1777185-1789579 Physcomitrium patens
Pp3c3_3090 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1777185-1787184 Physcomitrium patens
Pp3c3_3090 10.0kb downstream 10.0kb downstream 12395 true Chr03: 1787185-1799579 Physcomitrium patens
Pp3c3_3090 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1789580-1799579 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348119 5274 Embryophyte View MSA
123380732 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.296        
cufflinks 5.867        
cufflinks 4.145       Low
cufflinks 5.069        
cufflinks 6.448        
cufflinks 8.398       High
cufflinks 3.538       Low
cufflinks 6.613       High
cufflinks 5.616        
cufflinks 7.203       High
cufflinks 4.85        
cufflinks 5.293        
cufflinks 5.733        
cufflinks 5.341        
cufflinks 3.913       Low
cufflinks 4.134       Low
cufflinks 4.728        
cufflinks 6.21        
cufflinks 5.416        
cufflinks 6.749       High
cufflinks 5.7        
cufflinks 5.87        
cufflinks 6.785       High
cufflinks 4.528        
cufflinks 5.459        
cufflinks 3.56       Low
cufflinks 6.738       High
cufflinks 6.787       High
cufflinks 4.766        
cufflinks 3.822       Low

0 Strain