Gene : Pp3c4_25600 P. patens v3.3
Defline:  (1 of 1) PTHR30348 - UNCHARACTERIZED PROTEIN YECE Genomic Order:  1223
Name:  ? Pp3c4_25600 Secondary Identifier:  ? PAC:32920187
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c4_25600 0.5kb upstream 0.5kb upstream 5898 true Chr04: 17073834-17079731 Physcomitrium patens
Pp3c4_25600 0.5kb upstream 0.5kb upstream 500 false Chr04: 17079232-17079731 Physcomitrium patens
Pp3c4_25600 0.5kb downstream 0.5kb downstream 5898 true Chr04: 17073334-17079231 Physcomitrium patens
Pp3c4_25600 0.5kb downstream 0.5kb downstream 500 false Chr04: 17073334-17073833 Physcomitrium patens
Pp3c4_25600 1.0kb upstream 1.0kb upstream 6398 true Chr04: 17073834-17080231 Physcomitrium patens
Pp3c4_25600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 17079232-17080231 Physcomitrium patens
Pp3c4_25600 1.0kb downstream 1.0kb downstream 6398 true Chr04: 17072834-17079231 Physcomitrium patens
Pp3c4_25600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 17072834-17073833 Physcomitrium patens
Pp3c4_25600 2.0kb upstream 2.0kb upstream 7398 true Chr04: 17073834-17081231 Physcomitrium patens
Pp3c4_25600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 17079232-17081231 Physcomitrium patens
Pp3c4_25600 2.0kb downstream 2.0kb downstream 7398 true Chr04: 17071834-17079231 Physcomitrium patens
Pp3c4_25600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 17071834-17073833 Physcomitrium patens
Pp3c4_25600 5.0kb upstream 5.0kb upstream 10398 true Chr04: 17073834-17084231 Physcomitrium patens
Pp3c4_25600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 17079232-17084231 Physcomitrium patens
Pp3c4_25600 5.0kb downstream 5.0kb downstream 10398 true Chr04: 17068834-17079231 Physcomitrium patens
Pp3c4_25600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 17068834-17073833 Physcomitrium patens
Pp3c4_25600 10.0kb upstream 10.0kb upstream 15398 true Chr04: 17073834-17089231 Physcomitrium patens
Pp3c4_25600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 17079232-17089231 Physcomitrium patens
Pp3c4_25600 10.0kb downstream 10.0kb downstream 15398 true Chr04: 17063834-17079231 Physcomitrium patens
Pp3c4_25600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 17063834-17073833 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121327651 5274 Embryophyte Singleton cluster - no MSA
123427210 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.936        
cufflinks 0.795        
cufflinks 1.502        
cufflinks 1.905       High
cufflinks 1.009        
cufflinks 0.921        
cufflinks 0.509        
cufflinks 0.227       Low
cufflinks 0.468        
cufflinks 1.135        
cufflinks 1.278        
cufflinks 0.732        
cufflinks 1.841       High
cufflinks 0.916        
cufflinks 1.147        
cufflinks 0.819        
cufflinks 0.851        
cufflinks 0.785        
cufflinks 0.856        
cufflinks 0.38       Low
cufflinks 0.22       Low
cufflinks 0.82        
cufflinks 0.728        
cufflinks 0.801        
cufflinks 1.625       High
cufflinks 1.706       High
cufflinks 0.107       Low
cufflinks 1.199        
cufflinks 0.354       Low
cufflinks 1.278        

0 Strain