Gene : Pp3c4_29820 P. patens v3.3
Defline:  (1 of 2) PF02620 - Uncharacterized ACR, COG1399 (DUF177) Genomic Order:  1402
Name:  ? Pp3c4_29820 Secondary Identifier:  ? PAC:32922138
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c4_29820 0.5kb upstream 0.5kb upstream 3440 true Chr04: 20718270-20721709 Physcomitrium patens
Pp3c4_29820 0.5kb upstream 0.5kb upstream 500 false Chr04: 20721210-20721709 Physcomitrium patens
Pp3c4_29820 0.5kb downstream 0.5kb downstream 3440 true Chr04: 20717770-20721209 Physcomitrium patens
Pp3c4_29820 0.5kb downstream 0.5kb downstream 500 false Chr04: 20717770-20718269 Physcomitrium patens
Pp3c4_29820 1.0kb upstream 1.0kb upstream 3940 true Chr04: 20718270-20722209 Physcomitrium patens
Pp3c4_29820 1.0kb upstream 1.0kb upstream 1000 false Chr04: 20721210-20722209 Physcomitrium patens
Pp3c4_29820 1.0kb downstream 1.0kb downstream 3940 true Chr04: 20717270-20721209 Physcomitrium patens
Pp3c4_29820 1.0kb downstream 1.0kb downstream 1000 false Chr04: 20717270-20718269 Physcomitrium patens
Pp3c4_29820 2.0kb upstream 2.0kb upstream 4940 true Chr04: 20718270-20723209 Physcomitrium patens
Pp3c4_29820 2.0kb upstream 2.0kb upstream 2000 false Chr04: 20721210-20723209 Physcomitrium patens
Pp3c4_29820 2.0kb downstream 2.0kb downstream 4940 true Chr04: 20716270-20721209 Physcomitrium patens
Pp3c4_29820 2.0kb downstream 2.0kb downstream 2000 false Chr04: 20716270-20718269 Physcomitrium patens
Pp3c4_29820 5.0kb upstream 5.0kb upstream 7940 true Chr04: 20718270-20726209 Physcomitrium patens
Pp3c4_29820 5.0kb upstream 5.0kb upstream 5000 false Chr04: 20721210-20726209 Physcomitrium patens
Pp3c4_29820 5.0kb downstream 5.0kb downstream 7940 true Chr04: 20713270-20721209 Physcomitrium patens
Pp3c4_29820 5.0kb downstream 5.0kb downstream 5000 false Chr04: 20713270-20718269 Physcomitrium patens
Pp3c4_29820 10.0kb upstream 10.0kb upstream 12940 true Chr04: 20718270-20731209 Physcomitrium patens
Pp3c4_29820 10.0kb upstream 10.0kb upstream 10000 false Chr04: 20721210-20731209 Physcomitrium patens
Pp3c4_29820 10.0kb downstream 10.0kb downstream 12940 true Chr04: 20708270-20721209 Physcomitrium patens
Pp3c4_29820 10.0kb downstream 10.0kb downstream 10000 false Chr04: 20708270-20718269 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345181 5274 Embryophyte View MSA
123380171 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.154       High
cufflinks 23.644     High High
cufflinks 6.036       Low
cufflinks 14.663        
cufflinks 12.034        
cufflinks 5.125       Low
cufflinks 11.893        
cufflinks 8.612        
cufflinks 14.081        
cufflinks 11.354        
cufflinks 10.521        
cufflinks 8.85        
cufflinks 7.326        
cufflinks 17.098       High
cufflinks 13.402        
cufflinks 16.801       High
cufflinks 11.189        
cufflinks 9.646        
cufflinks 15.996        
cufflinks 8.275        
cufflinks 8.266        
cufflinks 11.237        
cufflinks 17.471       High
cufflinks 9.918        
cufflinks 7.319        
cufflinks 8.236        
cufflinks 3.599       Low
cufflinks 3.503       Low
cufflinks 14.198        
cufflinks 6.847        

0 Strain