Gene : Pp3c4_3140 P. patens v3.3
Defline:  (1 of 1) KOG1934 - Predicted membrane protein (patched superfamily) Genomic Order:  145
Name:  ? Pp3c4_3140 Secondary Identifier:  ? PAC:32920540
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c4_3140 0.5kb upstream 0.5kb upstream 9894 true Chr04: 1967457-1977350 Physcomitrium patens
Pp3c4_3140 0.5kb upstream 0.5kb upstream 500 false Chr04: 1967457-1967956 Physcomitrium patens
Pp3c4_3140 0.5kb downstream 0.5kb downstream 9894 true Chr04: 1967957-1977850 Physcomitrium patens
Pp3c4_3140 0.5kb downstream 0.5kb downstream 500 false Chr04: 1977351-1977850 Physcomitrium patens
Pp3c4_3140 1.0kb upstream 1.0kb upstream 10394 true Chr04: 1966957-1977350 Physcomitrium patens
Pp3c4_3140 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1966957-1967956 Physcomitrium patens
Pp3c4_3140 1.0kb downstream 1.0kb downstream 10394 true Chr04: 1967957-1978350 Physcomitrium patens
Pp3c4_3140 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1977351-1978350 Physcomitrium patens
Pp3c4_3140 2.0kb upstream 2.0kb upstream 11394 true Chr04: 1965957-1977350 Physcomitrium patens
Pp3c4_3140 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1965957-1967956 Physcomitrium patens
Pp3c4_3140 2.0kb downstream 2.0kb downstream 11394 true Chr04: 1967957-1979350 Physcomitrium patens
Pp3c4_3140 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1977351-1979350 Physcomitrium patens
Pp3c4_3140 5.0kb upstream 5.0kb upstream 14394 true Chr04: 1962957-1977350 Physcomitrium patens
Pp3c4_3140 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1962957-1967956 Physcomitrium patens
Pp3c4_3140 5.0kb downstream 5.0kb downstream 14394 true Chr04: 1967957-1982350 Physcomitrium patens
Pp3c4_3140 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1977351-1982350 Physcomitrium patens
Pp3c4_3140 10.0kb upstream 10.0kb upstream 19394 true Chr04: 1957957-1977350 Physcomitrium patens
Pp3c4_3140 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1957957-1967956 Physcomitrium patens
Pp3c4_3140 10.0kb downstream 10.0kb downstream 19394 true Chr04: 1967957-1987350 Physcomitrium patens
Pp3c4_3140 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1977351-1987350 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429105 5275 Viridiplantae View MSA
121342734 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.319        
cufflinks 0.024     Low Low
cufflinks 0.021     Low Low
cufflinks 3.597       High
cufflinks 0.166        
cufflinks 1.498        
cufflinks 2.437        
cufflinks 0.206        
cufflinks 1.461        
cufflinks 0.09        
cufflinks 8.331       High
cufflinks 0.035     Low Low
cufflinks 0.15        
cufflinks 3.533       High
cufflinks 3.573       High
cufflinks 0.464        
cufflinks 0.052     Low  
cufflinks 0.237        
cufflinks 0.038     Low Low
cufflinks 0.008     Low Low
cufflinks 7.426       High
cufflinks 4.276       High
cufflinks 0.074        
cufflinks 0.033     Low Low
cufflinks 10.736       High
cufflinks 0.163        
cufflinks 3.661       High
cufflinks 1.07        
cufflinks 0.01     Low Low
cufflinks 6.295       High

0 Strain