Gene : Pp3c5_23700 P. patens v3.3
Genomic Order:  1081 Name:  ? Pp3c5_23700
Secondary Identifier:  ? PAC:32953210
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_23700 0.5kb upstream 0.5kb upstream 3331 true Chr05: 16538296-16541626 Physcomitrium patens
Pp3c5_23700 0.5kb upstream 0.5kb upstream 500 false Chr05: 16541127-16541626 Physcomitrium patens
Pp3c5_23700 0.5kb downstream 0.5kb downstream 3331 true Chr05: 16537796-16541126 Physcomitrium patens
Pp3c5_23700 0.5kb downstream 0.5kb downstream 500 false Chr05: 16537796-16538295 Physcomitrium patens
Pp3c5_23700 1.0kb upstream 1.0kb upstream 3831 true Chr05: 16538296-16542126 Physcomitrium patens
Pp3c5_23700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 16541127-16542126 Physcomitrium patens
Pp3c5_23700 1.0kb downstream 1.0kb downstream 3831 true Chr05: 16537296-16541126 Physcomitrium patens
Pp3c5_23700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 16537296-16538295 Physcomitrium patens
Pp3c5_23700 2.0kb upstream 2.0kb upstream 4831 true Chr05: 16538296-16543126 Physcomitrium patens
Pp3c5_23700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 16541127-16543126 Physcomitrium patens
Pp3c5_23700 2.0kb downstream 2.0kb downstream 4831 true Chr05: 16536296-16541126 Physcomitrium patens
Pp3c5_23700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 16536296-16538295 Physcomitrium patens
Pp3c5_23700 5.0kb upstream 5.0kb upstream 7831 true Chr05: 16538296-16546126 Physcomitrium patens
Pp3c5_23700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 16541127-16546126 Physcomitrium patens
Pp3c5_23700 5.0kb downstream 5.0kb downstream 7831 true Chr05: 16533296-16541126 Physcomitrium patens
Pp3c5_23700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 16533296-16538295 Physcomitrium patens
Pp3c5_23700 10.0kb upstream 10.0kb upstream 12831 true Chr05: 16538296-16551126 Physcomitrium patens
Pp3c5_23700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 16541127-16551126 Physcomitrium patens
Pp3c5_23700 10.0kb downstream 10.0kb downstream 12831 true Chr05: 16528296-16541126 Physcomitrium patens
Pp3c5_23700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 16528296-16538295 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348542 5274 Embryophyte View MSA
123426495 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.313        
cufflinks 2.928        
cufflinks 3.828        
cufflinks 3.43        
cufflinks 4.08        
cufflinks 3.139        
cufflinks 11.177       High
cufflinks 3.938        
cufflinks 2.973        
cufflinks 11.164       High
cufflinks 1.555       Low
cufflinks 3.134        
cufflinks 2.328        
cufflinks 3.601        
cufflinks 4.738        
cufflinks 2.892        
cufflinks 1.848       Low
cufflinks 0.874       Low
cufflinks 2.83        
cufflinks 3.033        
cufflinks 3.283        
cufflinks 6.838       High
cufflinks 3.408        
cufflinks 2.715        
cufflinks 2.616        
cufflinks 3.488        
cufflinks 3.695        
cufflinks 1.883       Low
cufflinks 2.892        
cufflinks 2.463        

0 Strain