Gene : Pp3c5_22060 P. patens v3.3
Defline:  (1 of 1) PTHR13887:SF19 - GLUTATHIONE S-TRANSFERASE KAPPA 1 Genomic Order:  1018
Name:  ? Pp3c5_22060 Secondary Identifier:  ? PAC:32953997
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-6842 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_22060 0.5kb upstream 0.5kb upstream 3765 true Chr05: 15363492-15367256 Physcomitrium patens
Pp3c5_22060 0.5kb upstream 0.5kb upstream 500 false Chr05: 15366757-15367256 Physcomitrium patens
Pp3c5_22060 0.5kb downstream 0.5kb downstream 3765 true Chr05: 15362992-15366756 Physcomitrium patens
Pp3c5_22060 0.5kb downstream 0.5kb downstream 500 false Chr05: 15362992-15363491 Physcomitrium patens
Pp3c5_22060 1.0kb upstream 1.0kb upstream 4265 true Chr05: 15363492-15367756 Physcomitrium patens
Pp3c5_22060 1.0kb upstream 1.0kb upstream 1000 false Chr05: 15366757-15367756 Physcomitrium patens
Pp3c5_22060 1.0kb downstream 1.0kb downstream 4265 true Chr05: 15362492-15366756 Physcomitrium patens
Pp3c5_22060 1.0kb downstream 1.0kb downstream 1000 false Chr05: 15362492-15363491 Physcomitrium patens
Pp3c5_22060 2.0kb upstream 2.0kb upstream 5265 true Chr05: 15363492-15368756 Physcomitrium patens
Pp3c5_22060 2.0kb upstream 2.0kb upstream 2000 false Chr05: 15366757-15368756 Physcomitrium patens
Pp3c5_22060 2.0kb downstream 2.0kb downstream 5265 true Chr05: 15361492-15366756 Physcomitrium patens
Pp3c5_22060 2.0kb downstream 2.0kb downstream 2000 false Chr05: 15361492-15363491 Physcomitrium patens
Pp3c5_22060 5.0kb upstream 5.0kb upstream 8265 true Chr05: 15363492-15371756 Physcomitrium patens
Pp3c5_22060 5.0kb upstream 5.0kb upstream 5000 false Chr05: 15366757-15371756 Physcomitrium patens
Pp3c5_22060 5.0kb downstream 5.0kb downstream 8265 true Chr05: 15358492-15366756 Physcomitrium patens
Pp3c5_22060 5.0kb downstream 5.0kb downstream 5000 false Chr05: 15358492-15363491 Physcomitrium patens
Pp3c5_22060 10.0kb upstream 10.0kb upstream 13265 true Chr05: 15363492-15376756 Physcomitrium patens
Pp3c5_22060 10.0kb upstream 10.0kb upstream 10000 false Chr05: 15366757-15376756 Physcomitrium patens
Pp3c5_22060 10.0kb downstream 10.0kb downstream 13265 true Chr05: 15353492-15366756 Physcomitrium patens
Pp3c5_22060 10.0kb downstream 10.0kb downstream 10000 false Chr05: 15353492-15363491 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121332172 5274 Embryophyte Singleton cluster - no MSA
123369086 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.358        
cufflinks 0.498        
cufflinks 0.762        
cufflinks 0.442        
cufflinks 0.047       Low
cufflinks 0.567        
cufflinks 0.715        
cufflinks 0.771        
cufflinks 0.461        
cufflinks 0.78        
cufflinks 0.76        
cufflinks 0.04     Low Low
cufflinks 0.476        
cufflinks 0.533        
cufflinks 0.505        
cufflinks 0.87        
cufflinks 0.555        
cufflinks 0.472        
cufflinks 0.908        
cufflinks 0.803        
cufflinks 1.018        
cufflinks 0.393        
cufflinks 0.561        
cufflinks 0.927        
cufflinks 0.521        
cufflinks 0.6        
cufflinks 0.764        
cufflinks 0.652        
cufflinks 0.59        
cufflinks 0.823        

0 Strain