Gene : Pp3c5_4760 P. patens v3.3
Defline:  (1 of 2) PTHR10974:SF1 - PROTEIN Y41E3.1, ISOFORM A Genomic Order:  232
Name:  ? Pp3c5_4760 Secondary Identifier:  ? PAC:32955770
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c5_4760 0.5kb upstream 0.5kb upstream 5405 true Chr05: 3101735-3107139 Physcomitrium patens
Pp3c5_4760 0.5kb upstream 0.5kb upstream 500 false Chr05: 3106640-3107139 Physcomitrium patens
Pp3c5_4760 0.5kb downstream 0.5kb downstream 5405 true Chr05: 3101235-3106639 Physcomitrium patens
Pp3c5_4760 0.5kb downstream 0.5kb downstream 500 false Chr05: 3101235-3101734 Physcomitrium patens
Pp3c5_4760 1.0kb upstream 1.0kb upstream 5905 true Chr05: 3101735-3107639 Physcomitrium patens
Pp3c5_4760 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3106640-3107639 Physcomitrium patens
Pp3c5_4760 1.0kb downstream 1.0kb downstream 5905 true Chr05: 3100735-3106639 Physcomitrium patens
Pp3c5_4760 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3100735-3101734 Physcomitrium patens
Pp3c5_4760 2.0kb upstream 2.0kb upstream 6905 true Chr05: 3101735-3108639 Physcomitrium patens
Pp3c5_4760 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3106640-3108639 Physcomitrium patens
Pp3c5_4760 2.0kb downstream 2.0kb downstream 6905 true Chr05: 3099735-3106639 Physcomitrium patens
Pp3c5_4760 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3099735-3101734 Physcomitrium patens
Pp3c5_4760 5.0kb upstream 5.0kb upstream 9905 true Chr05: 3101735-3111639 Physcomitrium patens
Pp3c5_4760 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3106640-3111639 Physcomitrium patens
Pp3c5_4760 5.0kb downstream 5.0kb downstream 9905 true Chr05: 3096735-3106639 Physcomitrium patens
Pp3c5_4760 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3096735-3101734 Physcomitrium patens
Pp3c5_4760 10.0kb upstream 10.0kb upstream 14905 true Chr05: 3101735-3116639 Physcomitrium patens
Pp3c5_4760 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3106640-3116639 Physcomitrium patens
Pp3c5_4760 10.0kb downstream 10.0kb downstream 14905 true Chr05: 3091735-3106639 Physcomitrium patens
Pp3c5_4760 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3091735-3101734 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121332379 5274 Embryophyte Singleton cluster - no MSA
123369292 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.162     High  
cufflinks 5.897        
cufflinks 7.656        
cufflinks 13.641        
cufflinks 0.948       Low
cufflinks 1.789       Low
cufflinks 51.602     High High
cufflinks 3.181       Low
cufflinks 20.547     High  
cufflinks 20.601        
cufflinks 3.891        
cufflinks 10.743        
cufflinks 38.277     High High
cufflinks 54.937     High High
cufflinks 93.976     High High
cufflinks 19.575        
cufflinks 16.132        
cufflinks 17.665        
cufflinks 21.439     High  
cufflinks 35.255     High  
cufflinks 1.585       Low
cufflinks 14.569        
cufflinks 18.329        
cufflinks 1.179       Low
cufflinks 14.02        
cufflinks 5.684        
cufflinks 18.601        
cufflinks 29.86     High  
cufflinks 4.522        
cufflinks 14.048        

0 Strain