Gene : Pp3c6_16060 P. patens v3.3
Defline:  (1 of 2) PTHR30544:SF6 - RADICAL SAM DOMAIN-CONTAINING PROTEIN Genomic Order:  745
Name:  ? Pp3c6_16060 Secondary Identifier:  ? PAC:32978325
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_16060 0.5kb upstream 0.5kb upstream 5678   true Chr06: 10281107-10286784 Physcomitrium patens
Pp3c6_16060 0.5kb upstream 0.5kb upstream 500   false Chr06: 10281107-10281606 Physcomitrium patens
Pp3c6_16060 0.5kb downstream 0.5kb downstream 5678   true Chr06: 10281607-10287284 Physcomitrium patens
Pp3c6_16060 0.5kb downstream 0.5kb downstream 500   false Chr06: 10286785-10287284 Physcomitrium patens
Pp3c6_16060 1.0kb upstream 1.0kb upstream 6178   true Chr06: 10280607-10286784 Physcomitrium patens
Pp3c6_16060 1.0kb upstream 1.0kb upstream 1000   false Chr06: 10280607-10281606 Physcomitrium patens
Pp3c6_16060 1.0kb downstream 1.0kb downstream 6178   true Chr06: 10281607-10287784 Physcomitrium patens
Pp3c6_16060 1.0kb downstream 1.0kb downstream 1000   false Chr06: 10286785-10287784 Physcomitrium patens
Pp3c6_16060 2.0kb upstream 2.0kb upstream 7178   true Chr06: 10279607-10286784 Physcomitrium patens
Pp3c6_16060 2.0kb upstream 2.0kb upstream 2000   false Chr06: 10279607-10281606 Physcomitrium patens
Pp3c6_16060 2.0kb downstream 2.0kb downstream 7178   true Chr06: 10281607-10288784 Physcomitrium patens
Pp3c6_16060 2.0kb downstream 2.0kb downstream 2000   false Chr06: 10286785-10288784 Physcomitrium patens
Pp3c6_16060 5.0kb upstream 5.0kb upstream 10178   true Chr06: 10276607-10286784 Physcomitrium patens
Pp3c6_16060 5.0kb upstream 5.0kb upstream 5000   false Chr06: 10276607-10281606 Physcomitrium patens
Pp3c6_16060 5.0kb downstream 5.0kb downstream 10178   true Chr06: 10281607-10291784 Physcomitrium patens
Pp3c6_16060 5.0kb downstream 5.0kb downstream 5000   false Chr06: 10286785-10291784 Physcomitrium patens
Pp3c6_16060 10.0kb upstream 10.0kb upstream 15178   true Chr06: 10271607-10286784 Physcomitrium patens
Pp3c6_16060 10.0kb upstream 10.0kb upstream 10000   false Chr06: 10271607-10281606 Physcomitrium patens
Pp3c6_16060 10.0kb downstream 10.0kb downstream 15178   true Chr06: 10281607-10296784 Physcomitrium patens
Pp3c6_16060 10.0kb downstream 10.0kb downstream 10000   false Chr06: 10286785-10296784 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429187 5275 Viridiplantae View MSA
121344688 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.646        
cufflinks 3.375        
cufflinks 4.675        
cufflinks 1.099       Low
cufflinks 2.571        
cufflinks 6.754       High
cufflinks 3.065        
cufflinks 3.83        
cufflinks 7.901       High
cufflinks 1.972        
cufflinks 2.574        
cufflinks 3.999        
cufflinks 0.992       Low
cufflinks 1.084       Low
cufflinks 2.878        
cufflinks 3.297        
cufflinks 2.011        
cufflinks 3.753        
cufflinks 3.553        
cufflinks 5.531       High
cufflinks 3.102        
cufflinks 4.58        
cufflinks 4.177        
cufflinks 1.891        
cufflinks 2.337        
cufflinks 5.019        
cufflinks 3.803        
cufflinks 4.21        
cufflinks 1.909        
cufflinks 2.176        

0 Strain