Gene : Pp3c6_24190 P. patens v3.3
Genomic Order:  1150 Name:  ? Pp3c6_24190
Secondary Identifier:  ? PAC:32978886
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_24190 0.5kb upstream 0.5kb upstream 1047   true Chr06: 15871069-15872115 Physcomitrium patens
Pp3c6_24190 0.5kb upstream 0.5kb upstream 500   false Chr06: 15871616-15872115 Physcomitrium patens
Pp3c6_24190 0.5kb downstream 0.5kb downstream 1047   true Chr06: 15870569-15871615 Physcomitrium patens
Pp3c6_24190 0.5kb downstream 0.5kb downstream 500   false Chr06: 15870569-15871068 Physcomitrium patens
Pp3c6_24190 1.0kb upstream 1.0kb upstream 1547   true Chr06: 15871069-15872615 Physcomitrium patens
Pp3c6_24190 1.0kb upstream 1.0kb upstream 1000   false Chr06: 15871616-15872615 Physcomitrium patens
Pp3c6_24190 1.0kb downstream 1.0kb downstream 1547   true Chr06: 15870069-15871615 Physcomitrium patens
Pp3c6_24190 1.0kb downstream 1.0kb downstream 1000   false Chr06: 15870069-15871068 Physcomitrium patens
Pp3c6_24190 2.0kb upstream 2.0kb upstream 2547   true Chr06: 15871069-15873615 Physcomitrium patens
Pp3c6_24190 2.0kb upstream 2.0kb upstream 2000   false Chr06: 15871616-15873615 Physcomitrium patens
Pp3c6_24190 2.0kb downstream 2.0kb downstream 2547   true Chr06: 15869069-15871615 Physcomitrium patens
Pp3c6_24190 2.0kb downstream 2.0kb downstream 2000   false Chr06: 15869069-15871068 Physcomitrium patens
Pp3c6_24190 5.0kb upstream 5.0kb upstream 5547   true Chr06: 15871069-15876615 Physcomitrium patens
Pp3c6_24190 5.0kb upstream 5.0kb upstream 5000   false Chr06: 15871616-15876615 Physcomitrium patens
Pp3c6_24190 5.0kb downstream 5.0kb downstream 5547   true Chr06: 15866069-15871615 Physcomitrium patens
Pp3c6_24190 5.0kb downstream 5.0kb downstream 5000   false Chr06: 15866069-15871068 Physcomitrium patens
Pp3c6_24190 10.0kb upstream 10.0kb upstream 10547   true Chr06: 15871069-15881615 Physcomitrium patens
Pp3c6_24190 10.0kb upstream 10.0kb upstream 10000   false Chr06: 15871616-15881615 Physcomitrium patens
Pp3c6_24190 10.0kb downstream 10.0kb downstream 10547   true Chr06: 15861069-15871615 Physcomitrium patens
Pp3c6_24190 10.0kb downstream 10.0kb downstream 10000   false Chr06: 15861069-15871068 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121335247 5274 Embryophyte Singleton cluster - no MSA
123372107 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.044     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low  
cufflinks 0.015     Low Low
cufflinks 0.04     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.021     Low  
cufflinks 0.024     Low  
cufflinks 0.029     Low  
cufflinks 0.013     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.069     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.047     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain