Gene : Pp3c6_25020 P. patens v3.3
Defline:  (1 of 4) PF00069//PF00092//PF02743 - Protein kinase domain (Pkinase) // von Willebrand factor type A domain (VWA) // Cache domain (Cache_1) Genomic Order:  1190
Name:  ? Pp3c6_25020 Secondary Identifier:  ? PAC:32978234
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_25020 0.5kb upstream 0.5kb upstream 7985   true Chr06: 16423755-16431739 Physcomitrium patens
Pp3c6_25020 0.5kb upstream 0.5kb upstream 500   false Chr06: 16431240-16431739 Physcomitrium patens
Pp3c6_25020 0.5kb downstream 0.5kb downstream 7985   true Chr06: 16423255-16431239 Physcomitrium patens
Pp3c6_25020 0.5kb downstream 0.5kb downstream 500   false Chr06: 16423255-16423754 Physcomitrium patens
Pp3c6_25020 1.0kb upstream 1.0kb upstream 8485   true Chr06: 16423755-16432239 Physcomitrium patens
Pp3c6_25020 1.0kb upstream 1.0kb upstream 1000   false Chr06: 16431240-16432239 Physcomitrium patens
Pp3c6_25020 1.0kb downstream 1.0kb downstream 8485   true Chr06: 16422755-16431239 Physcomitrium patens
Pp3c6_25020 1.0kb downstream 1.0kb downstream 1000   false Chr06: 16422755-16423754 Physcomitrium patens
Pp3c6_25020 2.0kb upstream 2.0kb upstream 9485   true Chr06: 16423755-16433239 Physcomitrium patens
Pp3c6_25020 2.0kb upstream 2.0kb upstream 2000   false Chr06: 16431240-16433239 Physcomitrium patens
Pp3c6_25020 2.0kb downstream 2.0kb downstream 9485   true Chr06: 16421755-16431239 Physcomitrium patens
Pp3c6_25020 2.0kb downstream 2.0kb downstream 2000   false Chr06: 16421755-16423754 Physcomitrium patens
Pp3c6_25020 5.0kb upstream 5.0kb upstream 12485   true Chr06: 16423755-16436239 Physcomitrium patens
Pp3c6_25020 5.0kb upstream 5.0kb upstream 5000   false Chr06: 16431240-16436239 Physcomitrium patens
Pp3c6_25020 5.0kb downstream 5.0kb downstream 12485   true Chr06: 16418755-16431239 Physcomitrium patens
Pp3c6_25020 5.0kb downstream 5.0kb downstream 5000   false Chr06: 16418755-16423754 Physcomitrium patens
Pp3c6_25020 10.0kb upstream 10.0kb upstream 17485   true Chr06: 16423755-16441239 Physcomitrium patens
Pp3c6_25020 10.0kb upstream 10.0kb upstream 10000   false Chr06: 16431240-16441239 Physcomitrium patens
Pp3c6_25020 10.0kb downstream 10.0kb downstream 17485   true Chr06: 16413755-16431239 Physcomitrium patens
Pp3c6_25020 10.0kb downstream 10.0kb downstream 10000   false Chr06: 16413755-16423754 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336535 5274 Embryophyte View MSA
123373358 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.07     Low  
cufflinks 0.004     Low Low
cufflinks 0.066     Low  
cufflinks 0.64        
cufflinks 0.085     Low  
cufflinks 0.84        
cufflinks 0.151        
cufflinks 0.679        
cufflinks 1.931       High
cufflinks 0.225        
cufflinks 0.006     Low Low
cufflinks 0.308        
cufflinks 0.074        
cufflinks 1.207        
cufflinks 0.056     Low  
cufflinks 1.777       High
cufflinks 0.116        
cufflinks 0.174        
cufflinks 2.691       High
cufflinks 0.004     Low Low
cufflinks 0.038     Low  
cufflinks 0.086     Low  
cufflinks 0.142        
cufflinks 0.931        
cufflinks 0.765        
cufflinks 3.062       High
cufflinks 0.968        
cufflinks 2.819       High
cufflinks 0.019     Low Low
cufflinks 0.435        

0 Strain