Gene : Pp3c6_19160 P. patens v3.3
Defline:  (1 of 4) PTHR10322:SF23 - DNA POLYMERASE DELTA CATALYTIC SUBUNIT Genomic Order:  910
Name:  ? Pp3c6_19160 Secondary Identifier:  ? PAC:32976514
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_19160 0.5kb upstream 0.5kb upstream 12651   true Chr06: 12286174-12298824 Physcomitrium patens
Pp3c6_19160 0.5kb upstream 0.5kb upstream 500   false Chr06: 12298325-12298824 Physcomitrium patens
Pp3c6_19160 0.5kb downstream 0.5kb downstream 12651   true Chr06: 12285674-12298324 Physcomitrium patens
Pp3c6_19160 0.5kb downstream 0.5kb downstream 500   false Chr06: 12285674-12286173 Physcomitrium patens
Pp3c6_19160 1.0kb upstream 1.0kb upstream 13151   true Chr06: 12286174-12299324 Physcomitrium patens
Pp3c6_19160 1.0kb upstream 1.0kb upstream 1000   false Chr06: 12298325-12299324 Physcomitrium patens
Pp3c6_19160 1.0kb downstream 1.0kb downstream 13151   true Chr06: 12285174-12298324 Physcomitrium patens
Pp3c6_19160 1.0kb downstream 1.0kb downstream 1000   false Chr06: 12285174-12286173 Physcomitrium patens
Pp3c6_19160 2.0kb upstream 2.0kb upstream 14151   true Chr06: 12286174-12300324 Physcomitrium patens
Pp3c6_19160 2.0kb upstream 2.0kb upstream 2000   false Chr06: 12298325-12300324 Physcomitrium patens
Pp3c6_19160 2.0kb downstream 2.0kb downstream 14151   true Chr06: 12284174-12298324 Physcomitrium patens
Pp3c6_19160 2.0kb downstream 2.0kb downstream 2000   false Chr06: 12284174-12286173 Physcomitrium patens
Pp3c6_19160 5.0kb upstream 5.0kb upstream 17151   true Chr06: 12286174-12303324 Physcomitrium patens
Pp3c6_19160 5.0kb upstream 5.0kb upstream 5000   false Chr06: 12298325-12303324 Physcomitrium patens
Pp3c6_19160 5.0kb downstream 5.0kb downstream 17151   true Chr06: 12281174-12298324 Physcomitrium patens
Pp3c6_19160 5.0kb downstream 5.0kb downstream 5000   false Chr06: 12281174-12286173 Physcomitrium patens
Pp3c6_19160 10.0kb upstream 10.0kb upstream 22151   true Chr06: 12286174-12308324 Physcomitrium patens
Pp3c6_19160 10.0kb upstream 10.0kb upstream 10000   false Chr06: 12298325-12308324 Physcomitrium patens
Pp3c6_19160 10.0kb downstream 10.0kb downstream 22151   true Chr06: 12276174-12298324 Physcomitrium patens
Pp3c6_19160 10.0kb downstream 10.0kb downstream 10000   false Chr06: 12276174-12286173 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345127 5274 Embryophyte View MSA
123427922 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.201       Low
cufflinks 0.34        
cufflinks 0.141       Low
cufflinks 0.535        
cufflinks 0.456        
cufflinks 0.447        
cufflinks 0.474        
cufflinks 0.424        
cufflinks 0.601       High
cufflinks 0.517        
cufflinks 0.535        
cufflinks 0.388        
cufflinks 0.401        
cufflinks 0.5        
cufflinks 0.623       High
cufflinks 0.523        
cufflinks 0.47        
cufflinks 0.743       High
cufflinks 0.276        
cufflinks 0.166       Low
cufflinks 0.427        
cufflinks 0.472        
cufflinks 0.485        
cufflinks 0.636       High
cufflinks 0.138       Low
cufflinks 0.348        
cufflinks 0.272        
cufflinks 0.259        
cufflinks 0.304        
cufflinks 0.405        

0 Strain