Gene : Pp3c6_1920 P. patens v3.3
Defline:  (1 of 1) PTHR23115:SF184 - TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL Genomic Order:  100
Name:  ? Pp3c6_1920 Secondary Identifier:  ? PAC:32975297
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c6_1920 0.5kb upstream 0.5kb upstream 4385   true Chr06: 968115-972499 Physcomitrium patens
Pp3c6_1920 0.5kb upstream 0.5kb upstream 500   false Chr06: 968115-968614 Physcomitrium patens
Pp3c6_1920 0.5kb downstream 0.5kb downstream 4385   true Chr06: 968615-972999 Physcomitrium patens
Pp3c6_1920 0.5kb downstream 0.5kb downstream 500   false Chr06: 972500-972999 Physcomitrium patens
Pp3c6_1920 1.0kb upstream 1.0kb upstream 4885   true Chr06: 967615-972499 Physcomitrium patens
Pp3c6_1920 1.0kb upstream 1.0kb upstream 1000   false Chr06: 967615-968614 Physcomitrium patens
Pp3c6_1920 1.0kb downstream 1.0kb downstream 4885   true Chr06: 968615-973499 Physcomitrium patens
Pp3c6_1920 1.0kb downstream 1.0kb downstream 1000   false Chr06: 972500-973499 Physcomitrium patens
Pp3c6_1920 2.0kb upstream 2.0kb upstream 5885   true Chr06: 966615-972499 Physcomitrium patens
Pp3c6_1920 2.0kb upstream 2.0kb upstream 2000   false Chr06: 966615-968614 Physcomitrium patens
Pp3c6_1920 2.0kb downstream 2.0kb downstream 5885   true Chr06: 968615-974499 Physcomitrium patens
Pp3c6_1920 2.0kb downstream 2.0kb downstream 2000   false Chr06: 972500-974499 Physcomitrium patens
Pp3c6_1920 5.0kb upstream 5.0kb upstream 8885   true Chr06: 963615-972499 Physcomitrium patens
Pp3c6_1920 5.0kb upstream 5.0kb upstream 5000   false Chr06: 963615-968614 Physcomitrium patens
Pp3c6_1920 5.0kb downstream 5.0kb downstream 8885   true Chr06: 968615-977499 Physcomitrium patens
Pp3c6_1920 5.0kb downstream 5.0kb downstream 5000   false Chr06: 972500-977499 Physcomitrium patens
Pp3c6_1920 10.0kb upstream 10.0kb upstream 13885   true Chr06: 958615-972499 Physcomitrium patens
Pp3c6_1920 10.0kb upstream 10.0kb upstream 10000   false Chr06: 958615-968614 Physcomitrium patens
Pp3c6_1920 10.0kb downstream 10.0kb downstream 13885   true Chr06: 968615-982499 Physcomitrium patens
Pp3c6_1920 10.0kb downstream 10.0kb downstream 10000   false Chr06: 972500-982499 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344349 5274 Embryophyte View MSA
123428388 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.793        
cufflinks 4.792       High
cufflinks 3.844        
cufflinks 3.485        
cufflinks 3.063        
cufflinks 3.206        
cufflinks 3.38        
cufflinks 4.338        
cufflinks 2.78        
cufflinks 4.141        
cufflinks 3.115        
cufflinks 4.065        
cufflinks 4.507        
cufflinks 3.764        
cufflinks 2.207       Low
cufflinks 3.013        
cufflinks 3.212        
cufflinks 5.524       High
cufflinks 3.073        
cufflinks 4.107        
cufflinks 4.038        
cufflinks 2.962        
cufflinks 5.98       High
cufflinks 3.441        
cufflinks 3.608        
cufflinks 4.914       High
cufflinks 5.031       High
cufflinks 3.035        
cufflinks 1.549       Low
cufflinks 4.513        

0 Strain