Gene : Pp3c8_1540 P. patens v3.3
Defline:  (1 of 2) PTHR10796:SF77 - PROTEIN PATCHED Genomic Order:  62
Name:  ? Pp3c8_1540 Secondary Identifier:  ? PAC:32964378
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c8_1540 0.5kb upstream 0.5kb upstream 10294 true Chr08: 737489-747782 Physcomitrium patens
Pp3c8_1540 0.5kb upstream 0.5kb upstream 500 false Chr08: 747283-747782 Physcomitrium patens
Pp3c8_1540 0.5kb downstream 0.5kb downstream 10294 true Chr08: 736989-747282 Physcomitrium patens
Pp3c8_1540 0.5kb downstream 0.5kb downstream 500 false Chr08: 736989-737488 Physcomitrium patens
Pp3c8_1540 1.0kb upstream 1.0kb upstream 10794 true Chr08: 737489-748282 Physcomitrium patens
Pp3c8_1540 1.0kb upstream 1.0kb upstream 1000 false Chr08: 747283-748282 Physcomitrium patens
Pp3c8_1540 1.0kb downstream 1.0kb downstream 10794 true Chr08: 736489-747282 Physcomitrium patens
Pp3c8_1540 1.0kb downstream 1.0kb downstream 1000 false Chr08: 736489-737488 Physcomitrium patens
Pp3c8_1540 2.0kb upstream 2.0kb upstream 11794 true Chr08: 737489-749282 Physcomitrium patens
Pp3c8_1540 2.0kb upstream 2.0kb upstream 2000 false Chr08: 747283-749282 Physcomitrium patens
Pp3c8_1540 2.0kb downstream 2.0kb downstream 11794 true Chr08: 735489-747282 Physcomitrium patens
Pp3c8_1540 2.0kb downstream 2.0kb downstream 2000 false Chr08: 735489-737488 Physcomitrium patens
Pp3c8_1540 5.0kb upstream 5.0kb upstream 14794 true Chr08: 737489-752282 Physcomitrium patens
Pp3c8_1540 5.0kb upstream 5.0kb upstream 5000 false Chr08: 747283-752282 Physcomitrium patens
Pp3c8_1540 5.0kb downstream 5.0kb downstream 14794 true Chr08: 732489-747282 Physcomitrium patens
Pp3c8_1540 5.0kb downstream 5.0kb downstream 5000 false Chr08: 732489-737488 Physcomitrium patens
Pp3c8_1540 10.0kb upstream 10.0kb upstream 19794 true Chr08: 737489-757282 Physcomitrium patens
Pp3c8_1540 10.0kb upstream 10.0kb upstream 10000 false Chr08: 747283-757282 Physcomitrium patens
Pp3c8_1540 10.0kb downstream 10.0kb downstream 19794 true Chr08: 727489-747282 Physcomitrium patens
Pp3c8_1540 10.0kb downstream 10.0kb downstream 10000 false Chr08: 727489-737488 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429105 5275 Viridiplantae View MSA
121342734 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.293        
cufflinks 0.006     Low  
cufflinks 0.015     Low  
cufflinks 0.107        
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.114        
cufflinks 0.001     Low Low
cufflinks 0.006     Low  
cufflinks 0.415       High
cufflinks 0.018     Low  
cufflinks 0.005     Low  
cufflinks 0.002     Low Low
cufflinks 0.05     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.166        
cufflinks 0.312       High
cufflinks 0.047     Low  
cufflinks 0.32       High
cufflinks 0.002     Low Low
cufflinks 1.09       High
cufflinks 0.93       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.065     Low  
cufflinks 0.001     Low Low
cufflinks 0.595       High

0 Strain