Gene : Pp3c8_3720 P. patens v3.3
Defline:  (1 of 2) PTHR10350 - NUCLEAR PORE COMPLEX PROTEIN NUP155 Genomic Order:  185
Name:  ? Pp3c8_3720 Secondary Identifier:  ? PAC:32964098
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c8_3720 0.5kb upstream 0.5kb upstream 9575 true Chr08: 1949751-1959325 Physcomitrium patens
Pp3c8_3720 0.5kb upstream 0.5kb upstream 500 false Chr08: 1949751-1950250 Physcomitrium patens
Pp3c8_3720 0.5kb downstream 0.5kb downstream 9575 true Chr08: 1950251-1959825 Physcomitrium patens
Pp3c8_3720 0.5kb downstream 0.5kb downstream 500 false Chr08: 1959326-1959825 Physcomitrium patens
Pp3c8_3720 1.0kb upstream 1.0kb upstream 10075 true Chr08: 1949251-1959325 Physcomitrium patens
Pp3c8_3720 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1949251-1950250 Physcomitrium patens
Pp3c8_3720 1.0kb downstream 1.0kb downstream 10075 true Chr08: 1950251-1960325 Physcomitrium patens
Pp3c8_3720 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1959326-1960325 Physcomitrium patens
Pp3c8_3720 2.0kb upstream 2.0kb upstream 11075 true Chr08: 1948251-1959325 Physcomitrium patens
Pp3c8_3720 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1948251-1950250 Physcomitrium patens
Pp3c8_3720 2.0kb downstream 2.0kb downstream 11075 true Chr08: 1950251-1961325 Physcomitrium patens
Pp3c8_3720 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1959326-1961325 Physcomitrium patens
Pp3c8_3720 5.0kb upstream 5.0kb upstream 14075 true Chr08: 1945251-1959325 Physcomitrium patens
Pp3c8_3720 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1945251-1950250 Physcomitrium patens
Pp3c8_3720 5.0kb downstream 5.0kb downstream 14075 true Chr08: 1950251-1964325 Physcomitrium patens
Pp3c8_3720 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1959326-1964325 Physcomitrium patens
Pp3c8_3720 10.0kb upstream 10.0kb upstream 19075 true Chr08: 1940251-1959325 Physcomitrium patens
Pp3c8_3720 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1940251-1950250 Physcomitrium patens
Pp3c8_3720 10.0kb downstream 10.0kb downstream 19075 true Chr08: 1950251-1969325 Physcomitrium patens
Pp3c8_3720 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1959326-1969325 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344629 5274 Embryophyte View MSA
123428808 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.639       Low
cufflinks 3.863       High
cufflinks 3.016        
cufflinks 4.861       High
cufflinks 2.845        
cufflinks 2.316        
cufflinks 3.023        
cufflinks 2.824        
cufflinks 3.154        
cufflinks 3.435        
cufflinks 2.814        
cufflinks 2.907        
cufflinks 3.014        
cufflinks 0.672       Low
cufflinks 3.277        
cufflinks 2.777        
cufflinks 2.829        
cufflinks 1.864       Low
cufflinks 2.669        
cufflinks 1.655       Low
cufflinks 3.111        
cufflinks 2.738        
cufflinks 2.849        
cufflinks 2.996        
cufflinks 3.305        
cufflinks 1.545       Low
cufflinks 3.371        
cufflinks 1.985        
cufflinks 3.29        
cufflinks 2.927        

0 Strain