Gene : Pp3c8_2480 P. patens v3.3
Defline:  (1 of 2) KOG0723 - Molecular chaperone (DnaJ superfamily) Genomic Order:  116
Name:  ? Pp3c8_2480 Secondary Identifier:  ? PAC:32965934
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c8_2480 0.5kb upstream 0.5kb upstream 2651 true Chr08: 1255266-1257916 Physcomitrium patens
Pp3c8_2480 0.5kb upstream 0.5kb upstream 500 false Chr08: 1255266-1255765 Physcomitrium patens
Pp3c8_2480 0.5kb downstream 0.5kb downstream 2651 true Chr08: 1255766-1258416 Physcomitrium patens
Pp3c8_2480 0.5kb downstream 0.5kb downstream 500 false Chr08: 1257917-1258416 Physcomitrium patens
Pp3c8_2480 1.0kb upstream 1.0kb upstream 3151 true Chr08: 1254766-1257916 Physcomitrium patens
Pp3c8_2480 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1254766-1255765 Physcomitrium patens
Pp3c8_2480 1.0kb downstream 1.0kb downstream 3151 true Chr08: 1255766-1258916 Physcomitrium patens
Pp3c8_2480 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1257917-1258916 Physcomitrium patens
Pp3c8_2480 2.0kb upstream 2.0kb upstream 4151 true Chr08: 1253766-1257916 Physcomitrium patens
Pp3c8_2480 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1253766-1255765 Physcomitrium patens
Pp3c8_2480 2.0kb downstream 2.0kb downstream 4151 true Chr08: 1255766-1259916 Physcomitrium patens
Pp3c8_2480 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1257917-1259916 Physcomitrium patens
Pp3c8_2480 5.0kb upstream 5.0kb upstream 7151 true Chr08: 1250766-1257916 Physcomitrium patens
Pp3c8_2480 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1250766-1255765 Physcomitrium patens
Pp3c8_2480 5.0kb downstream 5.0kb downstream 7151 true Chr08: 1255766-1262916 Physcomitrium patens
Pp3c8_2480 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1257917-1262916 Physcomitrium patens
Pp3c8_2480 10.0kb upstream 10.0kb upstream 12151 true Chr08: 1245766-1257916 Physcomitrium patens
Pp3c8_2480 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1245766-1255765 Physcomitrium patens
Pp3c8_2480 10.0kb downstream 10.0kb downstream 12151 true Chr08: 1255766-1267916 Physcomitrium patens
Pp3c8_2480 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1257917-1267916 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429067 5275 Viridiplantae View MSA
121350989 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.548     High  
cufflinks 37.109     High  
cufflinks 46.744     High  
cufflinks 102.116     High High
cufflinks 1.364       Low
cufflinks 36.796     High  
cufflinks 44.705     High  
cufflinks 5.381       Low
cufflinks 36.075     High  
cufflinks 29.672     High  
cufflinks 42.356     High  
cufflinks 27.574     High  
cufflinks 83.801     High High
cufflinks 32.756     High  
cufflinks 28.581     High  
cufflinks 14.823        
cufflinks 18.409        
cufflinks 23.102     High  
cufflinks 35.358     High  
cufflinks 87.868     High High
cufflinks 52.212     High  
cufflinks 26.612     High  
cufflinks 54.981     High  
cufflinks 16.719        
cufflinks 67.916     High  
cufflinks 36.317     High  
cufflinks 3.768       Low
cufflinks 33.974     High  
cufflinks 0.605       Low
cufflinks 19.911        

0 Strain