Gene : Pp3c9_5530 P. patens v3.3
Defline:  (1 of 1) PTHR13096:SF5 - 50S RIBOSOMAL PROTEIN L16 ARGININE HYDROXYLASE Genomic Order:  289
Name:  ? Pp3c9_5530 Secondary Identifier:  ? PAC:32913311
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c9_5530 0.5kb upstream 0.5kb upstream 6433 true Chr09: 3132983-3139415 Physcomitrium patens
Pp3c9_5530 0.5kb upstream 0.5kb upstream 500 false Chr09: 3132983-3133482 Physcomitrium patens
Pp3c9_5530 0.5kb downstream 0.5kb downstream 6433 true Chr09: 3133483-3139915 Physcomitrium patens
Pp3c9_5530 0.5kb downstream 0.5kb downstream 500 false Chr09: 3139416-3139915 Physcomitrium patens
Pp3c9_5530 1.0kb upstream 1.0kb upstream 6933 true Chr09: 3132483-3139415 Physcomitrium patens
Pp3c9_5530 1.0kb upstream 1.0kb upstream 1000 false Chr09: 3132483-3133482 Physcomitrium patens
Pp3c9_5530 1.0kb downstream 1.0kb downstream 6933 true Chr09: 3133483-3140415 Physcomitrium patens
Pp3c9_5530 1.0kb downstream 1.0kb downstream 1000 false Chr09: 3139416-3140415 Physcomitrium patens
Pp3c9_5530 2.0kb upstream 2.0kb upstream 7933 true Chr09: 3131483-3139415 Physcomitrium patens
Pp3c9_5530 2.0kb upstream 2.0kb upstream 2000 false Chr09: 3131483-3133482 Physcomitrium patens
Pp3c9_5530 2.0kb downstream 2.0kb downstream 7933 true Chr09: 3133483-3141415 Physcomitrium patens
Pp3c9_5530 2.0kb downstream 2.0kb downstream 2000 false Chr09: 3139416-3141415 Physcomitrium patens
Pp3c9_5530 5.0kb upstream 5.0kb upstream 10933 true Chr09: 3128483-3139415 Physcomitrium patens
Pp3c9_5530 5.0kb upstream 5.0kb upstream 5000 false Chr09: 3128483-3133482 Physcomitrium patens
Pp3c9_5530 5.0kb downstream 5.0kb downstream 10933 true Chr09: 3133483-3144415 Physcomitrium patens
Pp3c9_5530 5.0kb downstream 5.0kb downstream 5000 false Chr09: 3139416-3144415 Physcomitrium patens
Pp3c9_5530 10.0kb upstream 10.0kb upstream 15933 true Chr09: 3123483-3139415 Physcomitrium patens
Pp3c9_5530 10.0kb upstream 10.0kb upstream 10000 false Chr09: 3123483-3133482 Physcomitrium patens
Pp3c9_5530 10.0kb downstream 10.0kb downstream 15933 true Chr09: 3133483-3149415 Physcomitrium patens
Pp3c9_5530 10.0kb downstream 10.0kb downstream 10000 false Chr09: 3139416-3149415 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348798 5274 Embryophyte View MSA
123428618 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.42        
cufflinks 0.524        
cufflinks 0.096       Low
cufflinks 0.529        
cufflinks 0.727       High
cufflinks 0.25       Low
cufflinks 0.399        
cufflinks 0.529        
cufflinks 0.644       High
cufflinks 0.226       Low
cufflinks 0.465        
cufflinks 0.521        
cufflinks 0.501        
cufflinks 0.441        
cufflinks 0.47        
cufflinks 0.526        
cufflinks 0.185       Low
cufflinks 0.445        
cufflinks 0.514        
cufflinks 0.548        
cufflinks 0.15       Low
cufflinks 0.309        
cufflinks 0.613        
cufflinks 0.619        
cufflinks 0.556        
cufflinks 0.564        
cufflinks 0.461        
cufflinks 0.315        
cufflinks 0.388        
cufflinks 0.47        

0 Strain