Gene : Pp3c9_3170 P. patens v3.3
Defline:  (1 of 3) 3.4.24.85 - S2P endopeptidase / Sterol-regulatory element-binding proteins intramembrane protease Genomic Order:  157
Name:  ? Pp3c9_3170 Secondary Identifier:  ? PAC:32912064
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c9_3170 0.5kb upstream 0.5kb upstream 3677 true Chr09: 1889118-1892794 Physcomitrium patens
Pp3c9_3170 0.5kb upstream 0.5kb upstream 500 false Chr09: 1892295-1892794 Physcomitrium patens
Pp3c9_3170 0.5kb downstream 0.5kb downstream 3677 true Chr09: 1888618-1892294 Physcomitrium patens
Pp3c9_3170 0.5kb downstream 0.5kb downstream 500 false Chr09: 1888618-1889117 Physcomitrium patens
Pp3c9_3170 1.0kb upstream 1.0kb upstream 4177 true Chr09: 1889118-1893294 Physcomitrium patens
Pp3c9_3170 1.0kb upstream 1.0kb upstream 1000 false Chr09: 1892295-1893294 Physcomitrium patens
Pp3c9_3170 1.0kb downstream 1.0kb downstream 4177 true Chr09: 1888118-1892294 Physcomitrium patens
Pp3c9_3170 1.0kb downstream 1.0kb downstream 1000 false Chr09: 1888118-1889117 Physcomitrium patens
Pp3c9_3170 2.0kb upstream 2.0kb upstream 5177 true Chr09: 1889118-1894294 Physcomitrium patens
Pp3c9_3170 2.0kb upstream 2.0kb upstream 2000 false Chr09: 1892295-1894294 Physcomitrium patens
Pp3c9_3170 2.0kb downstream 2.0kb downstream 5177 true Chr09: 1887118-1892294 Physcomitrium patens
Pp3c9_3170 2.0kb downstream 2.0kb downstream 2000 false Chr09: 1887118-1889117 Physcomitrium patens
Pp3c9_3170 5.0kb upstream 5.0kb upstream 8177 true Chr09: 1889118-1897294 Physcomitrium patens
Pp3c9_3170 5.0kb upstream 5.0kb upstream 5000 false Chr09: 1892295-1897294 Physcomitrium patens
Pp3c9_3170 5.0kb downstream 5.0kb downstream 8177 true Chr09: 1884118-1892294 Physcomitrium patens
Pp3c9_3170 5.0kb downstream 5.0kb downstream 5000 false Chr09: 1884118-1889117 Physcomitrium patens
Pp3c9_3170 10.0kb upstream 10.0kb upstream 13177 true Chr09: 1889118-1902294 Physcomitrium patens
Pp3c9_3170 10.0kb upstream 10.0kb upstream 10000 false Chr09: 1892295-1902294 Physcomitrium patens
Pp3c9_3170 10.0kb downstream 10.0kb downstream 13177 true Chr09: 1879118-1892294 Physcomitrium patens
Pp3c9_3170 10.0kb downstream 10.0kb downstream 10000 false Chr09: 1879118-1889117 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347975 5274 Embryophyte View MSA
123424345 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.975        
cufflinks 17.073       High
cufflinks 6.221        
cufflinks 10.199        
cufflinks 19.933       High
cufflinks 11.079        
cufflinks 7.708        
cufflinks 4.155       Low
cufflinks 15.119       High
cufflinks 7.108        
cufflinks 23.326     High High
cufflinks 4.268       Low
cufflinks 8.114        
cufflinks 10.403        
cufflinks 7.848        
cufflinks 5.099       Low
cufflinks 11.939        
cufflinks 7.691        
cufflinks 10.724        
cufflinks 8.198        
cufflinks 12.261        
cufflinks 6.612        
cufflinks 7.814        
cufflinks 19.694       High
cufflinks 11.01        
cufflinks 13.031        
cufflinks 9.749        
cufflinks 18.127       High
cufflinks 12.562        
cufflinks 4.598       Low

0 Strain