Gene : Pp3c10_1790 P. patens v3.3
Defline:  (1 of 26) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  52
Name:  ? Pp3c10_1790 Secondary Identifier:  ? PAC:32902545
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c10_1790 0.5kb upstream 0.5kb upstream 6223 true Chr10: 1546715-1552937 Physcomitrium patens
Pp3c10_1790 0.5kb upstream 0.5kb upstream 500 false Chr10: 1552438-1552937 Physcomitrium patens
Pp3c10_1790 0.5kb downstream 0.5kb downstream 6223 true Chr10: 1546215-1552437 Physcomitrium patens
Pp3c10_1790 0.5kb downstream 0.5kb downstream 500 false Chr10: 1546215-1546714 Physcomitrium patens
Pp3c10_1790 1.0kb upstream 1.0kb upstream 6723 true Chr10: 1546715-1553437 Physcomitrium patens
Pp3c10_1790 1.0kb upstream 1.0kb upstream 1000 false Chr10: 1552438-1553437 Physcomitrium patens
Pp3c10_1790 1.0kb downstream 1.0kb downstream 6723 true Chr10: 1545715-1552437 Physcomitrium patens
Pp3c10_1790 1.0kb downstream 1.0kb downstream 1000 false Chr10: 1545715-1546714 Physcomitrium patens
Pp3c10_1790 2.0kb upstream 2.0kb upstream 7723 true Chr10: 1546715-1554437 Physcomitrium patens
Pp3c10_1790 2.0kb upstream 2.0kb upstream 2000 false Chr10: 1552438-1554437 Physcomitrium patens
Pp3c10_1790 2.0kb downstream 2.0kb downstream 7723 true Chr10: 1544715-1552437 Physcomitrium patens
Pp3c10_1790 2.0kb downstream 2.0kb downstream 2000 false Chr10: 1544715-1546714 Physcomitrium patens
Pp3c10_1790 5.0kb upstream 5.0kb upstream 10723 true Chr10: 1546715-1557437 Physcomitrium patens
Pp3c10_1790 5.0kb upstream 5.0kb upstream 5000 false Chr10: 1552438-1557437 Physcomitrium patens
Pp3c10_1790 5.0kb downstream 5.0kb downstream 10723 true Chr10: 1541715-1552437 Physcomitrium patens
Pp3c10_1790 5.0kb downstream 5.0kb downstream 5000 false Chr10: 1541715-1546714 Physcomitrium patens
Pp3c10_1790 10.0kb upstream 10.0kb upstream 15723 true Chr10: 1546715-1562437 Physcomitrium patens
Pp3c10_1790 10.0kb upstream 10.0kb upstream 10000 false Chr10: 1552438-1562437 Physcomitrium patens
Pp3c10_1790 10.0kb downstream 10.0kb downstream 15723 true Chr10: 1536715-1552437 Physcomitrium patens
Pp3c10_1790 10.0kb downstream 10.0kb downstream 10000 false Chr10: 1536715-1546714 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343550 5274 Embryophyte View MSA
123379756 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.002     Low Low
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low Low
cufflinks 0.228        
cufflinks 0.299        
cufflinks 0.493        
cufflinks 0.195        
cufflinks 0.319        
cufflinks 0.1        
cufflinks 0.02     Low  
cufflinks 0.011     Low Low
cufflinks 0.054     Low  
cufflinks 0.002     Low Low
cufflinks 0.007     Low Low
cufflinks 0.272        
cufflinks 0.083     Low  
cufflinks 0.11        
cufflinks 0.895       High
cufflinks 0.084        
cufflinks 0.01     Low Low
cufflinks 0.209        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.321        
cufflinks 0.018     Low  
cufflinks 3.676       High
cufflinks 0.288        
cufflinks 10.088       High
cufflinks 0.05     Low  
cufflinks 0.248        

0 Strain