Gene : Pp3c10_6710 P. patens v3.3
Defline:  (1 of 9) PF00176//PF00271 - SNF2 family N-terminal domain (SNF2_N) // Helicase conserved C-terminal domain (Helicase_C) Genomic Order:  316
Name:  ? Pp3c10_6710 Secondary Identifier:  ? PAC:32900285
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c10_6710 0.5kb upstream 0.5kb upstream 9118 true Chr10: 4713587-4722704 Physcomitrium patens
Pp3c10_6710 0.5kb upstream 0.5kb upstream 500 false Chr10: 4722205-4722704 Physcomitrium patens
Pp3c10_6710 0.5kb downstream 0.5kb downstream 9118 true Chr10: 4713087-4722204 Physcomitrium patens
Pp3c10_6710 0.5kb downstream 0.5kb downstream 500 false Chr10: 4713087-4713586 Physcomitrium patens
Pp3c10_6710 1.0kb upstream 1.0kb upstream 9618 true Chr10: 4713587-4723204 Physcomitrium patens
Pp3c10_6710 1.0kb upstream 1.0kb upstream 1000 false Chr10: 4722205-4723204 Physcomitrium patens
Pp3c10_6710 1.0kb downstream 1.0kb downstream 9618 true Chr10: 4712587-4722204 Physcomitrium patens
Pp3c10_6710 1.0kb downstream 1.0kb downstream 1000 false Chr10: 4712587-4713586 Physcomitrium patens
Pp3c10_6710 2.0kb upstream 2.0kb upstream 10618 true Chr10: 4713587-4724204 Physcomitrium patens
Pp3c10_6710 2.0kb upstream 2.0kb upstream 2000 false Chr10: 4722205-4724204 Physcomitrium patens
Pp3c10_6710 2.0kb downstream 2.0kb downstream 10618 true Chr10: 4711587-4722204 Physcomitrium patens
Pp3c10_6710 2.0kb downstream 2.0kb downstream 2000 false Chr10: 4711587-4713586 Physcomitrium patens
Pp3c10_6710 5.0kb upstream 5.0kb upstream 13618 true Chr10: 4713587-4727204 Physcomitrium patens
Pp3c10_6710 5.0kb upstream 5.0kb upstream 5000 false Chr10: 4722205-4727204 Physcomitrium patens
Pp3c10_6710 5.0kb downstream 5.0kb downstream 13618 true Chr10: 4708587-4722204 Physcomitrium patens
Pp3c10_6710 5.0kb downstream 5.0kb downstream 5000 false Chr10: 4708587-4713586 Physcomitrium patens
Pp3c10_6710 10.0kb upstream 10.0kb upstream 18618 true Chr10: 4713587-4732204 Physcomitrium patens
Pp3c10_6710 10.0kb upstream 10.0kb upstream 10000 false Chr10: 4722205-4732204 Physcomitrium patens
Pp3c10_6710 10.0kb downstream 10.0kb downstream 18618 true Chr10: 4703587-4722204 Physcomitrium patens
Pp3c10_6710 10.0kb downstream 10.0kb downstream 10000 false Chr10: 4703587-4713586 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347907 5274 Embryophyte View MSA
123380672 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.49        
cufflinks 5.706        
cufflinks 3.046       Low
cufflinks 4.73        
cufflinks 5.489        
cufflinks 3.888        
cufflinks 6.877       High
cufflinks 4.941        
cufflinks 4.344        
cufflinks 3.431       Low
cufflinks 5.235        
cufflinks 5.552        
cufflinks 3.144       Low
cufflinks 4.531        
cufflinks 4.635        
cufflinks 6.473       High
cufflinks 2.124       Low
cufflinks 3.935        
cufflinks 5.415        
cufflinks 4.287        
cufflinks 4.102        
cufflinks 6.555       High
cufflinks 6.009       High
cufflinks 5.064        
cufflinks 3.645        
cufflinks 6.863       High
cufflinks 4.298        
cufflinks 3.883        
cufflinks 3.91        
cufflinks 4.817        

0 Strain