Gene : Pp3c11_18160 P. patens v3.3
Defline:  (1 of 1) PTHR12486:SF4 - APRATAXIN Genomic Order:  835
Name:  ? Pp3c11_18160 Secondary Identifier:  ? PAC:32956215
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c11_18160 0.5kb upstream 0.5kb upstream 6214 true Chr11: 12040128-12046341 Physcomitrium patens
Pp3c11_18160 0.5kb upstream 0.5kb upstream 500 false Chr11: 12040128-12040627 Physcomitrium patens
Pp3c11_18160 0.5kb downstream 0.5kb downstream 6214 true Chr11: 12040628-12046841 Physcomitrium patens
Pp3c11_18160 0.5kb downstream 0.5kb downstream 500 false Chr11: 12046342-12046841 Physcomitrium patens
Pp3c11_18160 1.0kb upstream 1.0kb upstream 6714 true Chr11: 12039628-12046341 Physcomitrium patens
Pp3c11_18160 1.0kb upstream 1.0kb upstream 1000 false Chr11: 12039628-12040627 Physcomitrium patens
Pp3c11_18160 1.0kb downstream 1.0kb downstream 6714 true Chr11: 12040628-12047341 Physcomitrium patens
Pp3c11_18160 1.0kb downstream 1.0kb downstream 1000 false Chr11: 12046342-12047341 Physcomitrium patens
Pp3c11_18160 2.0kb upstream 2.0kb upstream 7714 true Chr11: 12038628-12046341 Physcomitrium patens
Pp3c11_18160 2.0kb upstream 2.0kb upstream 2000 false Chr11: 12038628-12040627 Physcomitrium patens
Pp3c11_18160 2.0kb downstream 2.0kb downstream 7714 true Chr11: 12040628-12048341 Physcomitrium patens
Pp3c11_18160 2.0kb downstream 2.0kb downstream 2000 false Chr11: 12046342-12048341 Physcomitrium patens
Pp3c11_18160 5.0kb upstream 5.0kb upstream 10714 true Chr11: 12035628-12046341 Physcomitrium patens
Pp3c11_18160 5.0kb upstream 5.0kb upstream 5000 false Chr11: 12035628-12040627 Physcomitrium patens
Pp3c11_18160 5.0kb downstream 5.0kb downstream 10714 true Chr11: 12040628-12051341 Physcomitrium patens
Pp3c11_18160 5.0kb downstream 5.0kb downstream 5000 false Chr11: 12046342-12051341 Physcomitrium patens
Pp3c11_18160 10.0kb upstream 10.0kb upstream 15714 true Chr11: 12030628-12046341 Physcomitrium patens
Pp3c11_18160 10.0kb upstream 10.0kb upstream 10000 false Chr11: 12030628-12040627 Physcomitrium patens
Pp3c11_18160 10.0kb downstream 10.0kb downstream 15714 true Chr11: 12040628-12056341 Physcomitrium patens
Pp3c11_18160 10.0kb downstream 10.0kb downstream 10000 false Chr11: 12046342-12056341 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345852 5274 Embryophyte View MSA
123423994 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.759       Low
cufflinks 3.599        
cufflinks 5.051        
cufflinks 2.907       Low
cufflinks 4.893        
cufflinks 4.472        
cufflinks 8.209       High
cufflinks 4.108        
cufflinks 4.194        
cufflinks 5.153        
cufflinks 3.809        
cufflinks 6.515        
cufflinks 7.949       High
cufflinks 6.126        
cufflinks 4.596        
cufflinks 4.761        
cufflinks 9.08       High
cufflinks 7.764       High
cufflinks 4.267        
cufflinks 3.636        
cufflinks 4.431        
cufflinks 5.977        
cufflinks 3.671        
cufflinks 4.468        
cufflinks 3.447        
cufflinks 3.603        
cufflinks 5.36        
cufflinks 6.048        
cufflinks 8.065       High
cufflinks 6.721        

0 Strain