Gene : Pp3c11_8260 P. patens v3.3
Defline:  (1 of 4) KOG4585 - Predicted transposase Genomic Order:  379
Name:  ? Pp3c11_8260 Secondary Identifier:  ? PAC:32957593
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c11_8260 0.5kb upstream 0.5kb upstream 3688 true Chr11: 5346206-5349893 Physcomitrium patens
Pp3c11_8260 0.5kb upstream 0.5kb upstream 500 false Chr11: 5349394-5349893 Physcomitrium patens
Pp3c11_8260 0.5kb downstream 0.5kb downstream 3688 true Chr11: 5345706-5349393 Physcomitrium patens
Pp3c11_8260 0.5kb downstream 0.5kb downstream 500 false Chr11: 5345706-5346205 Physcomitrium patens
Pp3c11_8260 1.0kb upstream 1.0kb upstream 4188 true Chr11: 5346206-5350393 Physcomitrium patens
Pp3c11_8260 1.0kb upstream 1.0kb upstream 1000 false Chr11: 5349394-5350393 Physcomitrium patens
Pp3c11_8260 1.0kb downstream 1.0kb downstream 4188 true Chr11: 5345206-5349393 Physcomitrium patens
Pp3c11_8260 1.0kb downstream 1.0kb downstream 1000 false Chr11: 5345206-5346205 Physcomitrium patens
Pp3c11_8260 2.0kb upstream 2.0kb upstream 5188 true Chr11: 5346206-5351393 Physcomitrium patens
Pp3c11_8260 2.0kb upstream 2.0kb upstream 2000 false Chr11: 5349394-5351393 Physcomitrium patens
Pp3c11_8260 2.0kb downstream 2.0kb downstream 5188 true Chr11: 5344206-5349393 Physcomitrium patens
Pp3c11_8260 2.0kb downstream 2.0kb downstream 2000 false Chr11: 5344206-5346205 Physcomitrium patens
Pp3c11_8260 5.0kb upstream 5.0kb upstream 8188 true Chr11: 5346206-5354393 Physcomitrium patens
Pp3c11_8260 5.0kb upstream 5.0kb upstream 5000 false Chr11: 5349394-5354393 Physcomitrium patens
Pp3c11_8260 5.0kb downstream 5.0kb downstream 8188 true Chr11: 5341206-5349393 Physcomitrium patens
Pp3c11_8260 5.0kb downstream 5.0kb downstream 5000 false Chr11: 5341206-5346205 Physcomitrium patens
Pp3c11_8260 10.0kb upstream 10.0kb upstream 13188 true Chr11: 5346206-5359393 Physcomitrium patens
Pp3c11_8260 10.0kb upstream 10.0kb upstream 10000 false Chr11: 5349394-5359393 Physcomitrium patens
Pp3c11_8260 10.0kb downstream 10.0kb downstream 13188 true Chr11: 5336206-5349393 Physcomitrium patens
Pp3c11_8260 10.0kb downstream 10.0kb downstream 10000 false Chr11: 5336206-5346205 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348117 5274 Embryophyte View MSA
123380731 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.883       Low
cufflinks 4.084        
cufflinks 4.249        
cufflinks 3.654        
cufflinks 4.759       High
cufflinks 4.423        
cufflinks 3.668        
cufflinks 3.551        
cufflinks 3.593        
cufflinks 5.141       High
cufflinks 4.041        
cufflinks 2.961        
cufflinks 3.158        
cufflinks 2.886       Low
cufflinks 4.285        
cufflinks 4.969       High
cufflinks 2.748       Low
cufflinks 3.639        
cufflinks 4.13        
cufflinks 6.311       High
cufflinks 2.293       Low
cufflinks 2.887       Low
cufflinks 3.133        
cufflinks 4.745       High
cufflinks 4.361        
cufflinks 3.928        
cufflinks 3.987        
cufflinks 3.575        
cufflinks 3.917        
cufflinks 2.392       Low

0 Strain