Protein Domain : IPR014645

Type:  Family Name:  Target of Myb protein 1
Description:  Tom1 (target of Myb 1) and its related proteins (Tom1L1 and Tom1L2) constitute a protein family and share an N-terminal VHS (Vps27p/Hrs/Stam) domain followed by a GAT (GGA and Tom1) domain.VHS domains are found at the N termini of select proteins involved in intracellular membrane trafficking and are often localized to membranes. The three dimensional structure of human TOM1 VHS domain reveals eight helices arranged in a superhelix. The surface of the domain has two main features: (1) a basic patch on one side due to several conserved positively charged residues on helix 3 and (2) a negatively charged ridge on the opposite side, formed by residues on helix 2 []. The basic patch is thought to mediate membrane binding.It was demonstrated that the GAT domain of both Tom1 and Tom1L1 binds ubiquitin, suggesting that these proteins might participate in the sorting of ubiquitinated proteins into multivesicular bodies (MVB) []. Moreover, Tom1L1 interacts with members of the MVB sorting machinery. Specifically, the VHS domain of Tom1L1 interacts with Hrs (hepatocyte growth factor-regulated tyrosine kinase substrate), whereas a PTAP motif, located between the VHS and GAT domains of Tom1L1, is responsible for binding to TSG101 (tumour susceptibility gene 101). Myc epitope-tagged Tom1L1 is recruited to endosomes following Hrs expression. In addition, Tom1L1 possesses several tyrosine motifs at the C-terminal region that mediate interactions with members of the Src family kinases and other signalling proteins such as Grb2 and p85. Expression of a constitutively active form of Fyn kinase promotes the recruitment of Tom1L1 to enlarged endosomes. It is proposed that Tom1L1 could act as an intermediary between the signalling and degradative pathways [].Over expression of Tom1 suppresses activation of the transcription factors NF-kappaB and AP-1, induced by either IL-1beta or tumour necrosis factor (TNF)-alpha, and the VHS domain of Tom1 is indispensable for this suppressive activity. This suggests that Tom1 is a common negative regulator of signalling pathways induced by IL-1beta and TNF-alpha []. Short Name:  TOM1

2 Child Features

DB identifier Type Name
IPR027428 Family TOM1-like protein 1
IPR027429 Family Target of Myb1-like 2

3 Contains

DB identifier Type Name
IPR018205 Domain VHS subgroup
IPR002014 Domain VHS domain
IPR004152 Domain GAT domain

1 Cross References

Identifier
PIRSF036948

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

950 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
82329 D8QZY4 PAC:15410460 Selaginella moellendorffii 355  
89807 D8RBC3 PAC:15412345 Selaginella moellendorffii 397  
Cucsa.077250.1 PAC:16955921 Cucumis sativus 494  
Cucsa.077250.10 PAC:16955922 Cucumis sativus 486  
Cucsa.077250.9 A0A0A0KIF1 PAC:16955930 Cucumis sativus 487  
Cucsa.077250.2 A0A0A0KIF1 PAC:16955923 Cucumis sativus 487  
Cucsa.077250.4 A0A0A0KIF1 PAC:16955925 Cucumis sativus 487  
orange1.1g011515m A0A067GJF3 PAC:18096929 Citrus sinensis 484  
AT1G76970.1 Q6NQK0 PAC:19649751 Arabidopsis thaliana 446  
Thhalv10019577m V4M8D5 PAC:20192239 Eutrema salsugineum 465  
Lus10013788 PAC:23169058 Linum usitatissimum 396  
Lus10039144 PAC:23150422 Linum usitatissimum 394  
Lus10029739 PAC:23152008 Linum usitatissimum 509  
Lus10042770 PAC:23181738 Linum usitatissimum 501  
Potri.002G075500.3 B9GTY0 PAC:27023119 Populus trichocarpa 520  
Potri.002G075500.1 B9GTY0 PAC:27023120 Populus trichocarpa 520  
Potri.002G075500.2 PAC:27023121 Populus trichocarpa 388  
Potri.005G184900.2 PAC:27031461 Populus trichocarpa 493  
Gorai.001G027900.4 A0A0D2PL36 PAC:26819656 Gossypium raimondii 471  
Gorai.001G253900.1 A0A0D2NE42 PAC:26819470 Gossypium raimondii 375  
Gorai.001G253900.4 A0A0D2NE42 PAC:26819471 Gossypium raimondii 375  
Gorai.001G253900.3 A0A0D2NE42 PAC:26819473 Gossypium raimondii 375  
Gorai.001G253900.2 A0A0D2NE42 PAC:26819472 Gossypium raimondii 375  
Gorai.009G250700.1 A0A0D2S7X2 PAC:26763818 Gossypium raimondii 507  
Gorai.009G250700.2 A0A0D2S7X2 PAC:26763819 Gossypium raimondii 507  
Migut.F00092.2.p A0A022RZ95 PAC:28932064 Mimulus guttatus 399  
Migut.F00092.1.p A0A022RZ95 PAC:28932063 Mimulus guttatus 399  
Migut.C01086.2.p A0A022QX71 PAC:28944053 Mimulus guttatus 501  
Migut.C01086.1.p A0A022QX71 PAC:28944052 Mimulus guttatus 501  
Araha.63487s0002.1.p PAC:28854639 Arabidopsis halleri 586  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            10985773
            15611048
            14563850
            15056867