Protein Domain : IPR004625

Type:  Family Name:  Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase
Description:  Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy [].PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic [].This entry represents pyridoxal kinase (), which is required for the synthesis of pyridoxal-5-phosphate from vitamin B6, and catalyses the conversion of pyridoxal to pyridoxal 5'-phosphate in the presence of ATP. Escherichia colihas an enzyme PdxK that acts in vitroas a pyridoxine/pyridoxal/pyridoxamine kinase, but mutants lacking PdxK activity retain a specific pyridoxamine kinase, PdxY []. PdxY acts in the salvage pathway of pyridoxal 5'-phosphate biosynthesis. Mammalian forms of pyridoxal kinase are more similar to PdxY than to PdxK. Short Name:  PyrdxlP_synth_PyrdxlKinase

2 Child Features

DB identifier Type Name
IPR023479 Family Pyridoxal kinase
IPR023685 Family Pyridoxal kinase PdxY

1 Contains

DB identifier Type Name
IPR011611 Domain Carbohydrate kinase PfkB

2 Cross Referencess

Identifier
PTHR10534
TIGR00687

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0008478 IPR004625
GO:0009443 IPR004625

2 Ontology Annotations

GO Term Gene Name
GO:0008478 IPR004625
GO:0009443 IPR004625

0 Parent Features

735 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
170710 D8RED0 PAC:15408143 Selaginella moellendorffii 300  
evm.model.supercontig_116.24 PAC:16406279 Carica papaya 160  
evm.model.supercontig_116.26 PAC:16406281 Carica papaya 195  
30099.m001733 B9S7R8 PAC:16817754 Ricinus communis 293  
Cucsa.012730.1 A0A0A0LCU0 PAC:16951556 Cucumis sativus 308  
orange1.1g021743m PAC:18131021 Citrus sinensis 308  
orange1.1g022988m PAC:18131022 Citrus sinensis 289  
orange1.1g027620m PAC:18131024 Citrus sinensis 221  
orange1.1g024300m PAC:18131023 Citrus sinensis 269  
AT5G37850.2 Q8W1X2 PAC:19669585 Arabidopsis thaliana 309  
AT5G37850.3 F4K8N1 PAC:19669584 Arabidopsis thaliana 315  
AT5G37850.1 Q8W1X2 PAC:19669583 Arabidopsis thaliana 343  
Thhalv10027854m V4NLI1 PAC:20189656 Eutrema salsugineum 309  
Ciclev10012225m V4ST35 PAC:20799061 Citrus clementina 318  
Ciclev10012123m V4S8Q6 PAC:20799060 Citrus clementina 341  
Ciclev10012086m V4UW03 PAC:20799059 Citrus clementina 350  
Lus10009119 PAC:23150060 Linum usitatissimum 350  
Lus10010977 PAC:23172487 Linum usitatissimum 287  
Lus10028527 PAC:23166029 Linum usitatissimum 331  
Potri.004G087900.1 B9H399 PAC:26990865 Populus trichocarpa 66  
Potri.017G129000.5 U5FKC0 PAC:26984106 Populus trichocarpa 336  
Potri.017G129000.6 PAC:26984107 Populus trichocarpa 334  
Potri.017G129000.7 PAC:26984108 Populus trichocarpa 331  
Potri.017G129000.2 PAC:26984103 Populus trichocarpa 353  
Potri.017G129000.3 PAC:26984104 Populus trichocarpa 350  
Potri.017G129000.4 PAC:26984105 Populus trichocarpa 347  
Potri.017G129000.12 PAC:26984112 Populus trichocarpa 206  
Potri.017G129000.11 PAC:26984113 Populus trichocarpa 127  
Potri.017G129000.8 PAC:26984109 Populus trichocarpa 326  
Potri.017G129000.9 A0A2K1X776 PAC:26984110 Populus trichocarpa 308  

7 Publications

First Author Title Year Journal Volume Pages PubMed ID
            7748903
            15581583
            8690703
            15189147
            16763894
            17109392
            9537380