Gene : LOC_Os03g52840 O. sativa v7.0
Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  3689
Name:  ? LOC_Os03g52840 Secondary Identifier:  ? PAC:33130264
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Osativa GLYSYN-PWY Oryza sativa pathologic  
Osativa PWY-2161 Oryza sativa pathologic  
Osativa PWY-3841 Oryza sativa pathologic  
Osativa SER-GLYSYN-PWY Oryza sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
LOC_Os03g52840 0.5kb upstream 0.5kb upstream 5199 true Chr3: 30299051-30304249 Oryza sativa
LOC_Os03g52840 0.5kb upstream 0.5kb upstream 500 false Chr3: 30299051-30299550 Oryza sativa
LOC_Os03g52840 0.5kb downstream 0.5kb downstream 5199 true Chr3: 30299551-30304749 Oryza sativa
LOC_Os03g52840 0.5kb downstream 0.5kb downstream 500 false Chr3: 30304250-30304749 Oryza sativa
LOC_Os03g52840 1.0kb upstream 1.0kb upstream 5699 true Chr3: 30298551-30304249 Oryza sativa
LOC_Os03g52840 1.0kb upstream 1.0kb upstream 1000 false Chr3: 30298551-30299550 Oryza sativa
LOC_Os03g52840 1.0kb downstream 1.0kb downstream 5699 true Chr3: 30299551-30305249 Oryza sativa
LOC_Os03g52840 1.0kb downstream 1.0kb downstream 1000 false Chr3: 30304250-30305249 Oryza sativa
LOC_Os03g52840 2.0kb upstream 2.0kb upstream 6699 true Chr3: 30297551-30304249 Oryza sativa
LOC_Os03g52840 2.0kb upstream 2.0kb upstream 2000 false Chr3: 30297551-30299550 Oryza sativa
LOC_Os03g52840 2.0kb downstream 2.0kb downstream 6699 true Chr3: 30299551-30306249 Oryza sativa
LOC_Os03g52840 2.0kb downstream 2.0kb downstream 2000 false Chr3: 30304250-30306249 Oryza sativa
LOC_Os03g52840 5.0kb upstream 5.0kb upstream 9699 true Chr3: 30294551-30304249 Oryza sativa
LOC_Os03g52840 5.0kb upstream 5.0kb upstream 5000 false Chr3: 30294551-30299550 Oryza sativa
LOC_Os03g52840 5.0kb downstream 5.0kb downstream 9699 true Chr3: 30299551-30309249 Oryza sativa
LOC_Os03g52840 5.0kb downstream 5.0kb downstream 5000 false Chr3: 30304250-30309249 Oryza sativa
LOC_Os03g52840 10.0kb upstream 10.0kb upstream 14699 true Chr3: 30289551-30304249 Oryza sativa
LOC_Os03g52840 10.0kb upstream 10.0kb upstream 10000 false Chr3: 30289551-30299550 Oryza sativa
LOC_Os03g52840 10.0kb downstream 10.0kb downstream 14699 true Chr3: 30299551-30314249 Oryza sativa
LOC_Os03g52840 10.0kb downstream 10.0kb downstream 10000 false Chr3: 30304250-30314249 Oryza sativa

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570013 5269 Grass View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain