Protein Domain : IPR008924

Type:  Domain Name:  Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal
Description:  Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry [].MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. This entry represents the C-terminal domain of the alpha and beta subunits, which share a common structure. The C-terminal domain is a multi-helical bundle and contains a buried central helix. Short Name:  Me_CoM_Rdtase_asu/bsu_C

2 Child Features

DB identifier Type Name
IPR022681 Domain Methyl-coenzyme M reductase, alpha/beta subunit, domain 2, C-terminal
IPR022679 Domain Methyl-coenzyme M reductase, beta subunit, C-terminal

1 Contains

DB identifier Type Name
IPR009047 Domain Methyl-coenzyme M reductase, alpha subunit, C-terminal

1 Cross References

Identifier
SSF48081

2 Found Ins

DB identifier Type Name
IPR016212 Family Methyl coenzyme M reductase, alpha subunit
IPR003179 Family Methyl-coenzyme M reductase, beta subunit

2 GO Annotations

GO Term Gene Name
GO:0050524 IPR008924
GO:0015948 IPR008924

2 Ontology Annotations

GO Term Gene Name
GO:0050524 IPR008924
GO:0015948 IPR008924

0 Parent Features

16 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
Zosma2g03680.1 A0A0K9PBK8 PAC:33181291 Zostera marina 151  
Phvul.008G159800.2.p PAC:37160202 Phaseolus vulgaris 331  
Zm00008a034183_P01 PAC:37181402 Zea mays PH207 194  
Potri.011G059101.1.p A0A3N7FV40 PAC:37240128 Populus trichocarpa 153  
HORVU2Hr1G013870.3 PAC:38377818 Hordeum vulgare 253  
Zm00001d045938_P006 A0A1D6NZX1 PAC:40251517 Zea mays 124  
Zm00001d045938_P007 A0A1D6NZX2 PAC:40251516 Zea mays 127  
Zm00001d045938_P009 K7W8N6 PAC:40251515 Zea mays 194  
Zm00001d045938_P003 A0A1D6NZW8 PAC:40251513 Zea mays 280  
Zm00001d045938_P004 A0A1D6NZW9 PAC:40251511 Zea mays 534  
Zm00001d045938_P005 C0PBU4 PAC:40251510 Zea mays 560  
ZmPHJ40.09G079800.1.p PAC:41346243 Zea mays PHJ40 560  
ZmPHB47.09G086900.1.p PAC:41450920 Zea mays PHB47 560  
arahy.Tifrunner.gnm1.ann1.5BD9V0.1 PAC:42636065 Arachis hypogaea 150  
PvUI111.08G157600.1.p PAC:42827357 Phaseolus vulgaris UI111 331  
Vocar.0070s0001.1.p PAC:32895830 Volvox carteri 381  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9367957
            11491299
            16260307
            16234924