Gene : Thhalv10020322m.g E. salsugineum v1.0
Defline:  (1 of 1) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Genomic Order:  1741
Name:  ? Thhalv10020322m.g Secondary Identifier:  ? PAC:20182131
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum ARO-PWY Eutrema salsugineum pathologic  
Esalsugineum PWY-6163 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10020322m.g 0.5kb upstream 0.5kb upstream 4025 true scaffold_13: 7446477-7450501 Eutrema salsugineum
Thhalv10020322m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_13: 7446477-7446976 Eutrema salsugineum
Thhalv10020322m.g 0.5kb downstream 0.5kb downstream 4025 true scaffold_13: 7446977-7451001 Eutrema salsugineum
Thhalv10020322m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_13: 7450502-7451001 Eutrema salsugineum
Thhalv10020322m.g 1.0kb upstream 1.0kb upstream 4525 true scaffold_13: 7445977-7450501 Eutrema salsugineum
Thhalv10020322m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_13: 7445977-7446976 Eutrema salsugineum
Thhalv10020322m.g 1.0kb downstream 1.0kb downstream 4525 true scaffold_13: 7446977-7451501 Eutrema salsugineum
Thhalv10020322m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_13: 7450502-7451501 Eutrema salsugineum
Thhalv10020322m.g 2.0kb upstream 2.0kb upstream 5525 true scaffold_13: 7444977-7450501 Eutrema salsugineum
Thhalv10020322m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_13: 7444977-7446976 Eutrema salsugineum
Thhalv10020322m.g 2.0kb downstream 2.0kb downstream 5525 true scaffold_13: 7446977-7452501 Eutrema salsugineum
Thhalv10020322m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_13: 7450502-7452501 Eutrema salsugineum
Thhalv10020322m.g 5.0kb upstream 5.0kb upstream 8525 true scaffold_13: 7441977-7450501 Eutrema salsugineum
Thhalv10020322m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_13: 7441977-7446976 Eutrema salsugineum
Thhalv10020322m.g 5.0kb downstream 5.0kb downstream 8525 true scaffold_13: 7446977-7455501 Eutrema salsugineum
Thhalv10020322m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_13: 7450502-7455501 Eutrema salsugineum
Thhalv10020322m.g 10.0kb upstream 10.0kb upstream 13525 true scaffold_13: 7436977-7450501 Eutrema salsugineum
Thhalv10020322m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_13: 7436977-7446976 Eutrema salsugineum
Thhalv10020322m.g 10.0kb downstream 10.0kb downstream 13525 true scaffold_13: 7446977-7460501 Eutrema salsugineum
Thhalv10020322m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_13: 7450502-7460501 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372861 5261 Brassicaceae View MSA
123830471 5264 Brassicales-Malvales View MSA
124341830 5266 SBM View MSA
124242776 5268 Malvidae View MSA
124068153 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain