Gene : Thhalv10020337m.g E. salsugineum v1.0
Defline:  (1 of 2) PTHR10543:SF26 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED Genomic Order:  973
Name:  ? Thhalv10020337m.g Secondary Identifier:  ? PAC:20183982
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-695 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10020337m.g 0.5kb upstream 0.5kb upstream 2306 true scaffold_13: 4533195-4535500 Eutrema salsugineum
Thhalv10020337m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_13: 4533195-4533694 Eutrema salsugineum
Thhalv10020337m.g 0.5kb downstream 0.5kb downstream 2306 true scaffold_13: 4533695-4536000 Eutrema salsugineum
Thhalv10020337m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_13: 4535501-4536000 Eutrema salsugineum
Thhalv10020337m.g 1.0kb upstream 1.0kb upstream 2806 true scaffold_13: 4532695-4535500 Eutrema salsugineum
Thhalv10020337m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_13: 4532695-4533694 Eutrema salsugineum
Thhalv10020337m.g 1.0kb downstream 1.0kb downstream 2806 true scaffold_13: 4533695-4536500 Eutrema salsugineum
Thhalv10020337m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_13: 4535501-4536500 Eutrema salsugineum
Thhalv10020337m.g 2.0kb upstream 2.0kb upstream 3806 true scaffold_13: 4531695-4535500 Eutrema salsugineum
Thhalv10020337m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_13: 4531695-4533694 Eutrema salsugineum
Thhalv10020337m.g 2.0kb downstream 2.0kb downstream 3806 true scaffold_13: 4533695-4537500 Eutrema salsugineum
Thhalv10020337m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_13: 4535501-4537500 Eutrema salsugineum
Thhalv10020337m.g 5.0kb upstream 5.0kb upstream 6806 true scaffold_13: 4528695-4535500 Eutrema salsugineum
Thhalv10020337m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_13: 4528695-4533694 Eutrema salsugineum
Thhalv10020337m.g 5.0kb downstream 5.0kb downstream 6806 true scaffold_13: 4533695-4540500 Eutrema salsugineum
Thhalv10020337m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_13: 4535501-4540500 Eutrema salsugineum
Thhalv10020337m.g 10.0kb upstream 10.0kb upstream 11806 true scaffold_13: 4523695-4535500 Eutrema salsugineum
Thhalv10020337m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_13: 4523695-4533694 Eutrema salsugineum
Thhalv10020337m.g 10.0kb downstream 10.0kb downstream 11806 true scaffold_13: 4533695-4545500 Eutrema salsugineum
Thhalv10020337m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_13: 4535501-4545500 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361119 5261 Brassicaceae View MSA
123839521 5264 Brassicales-Malvales View MSA
124350973 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain