Gene : Thhalv10028011m.g E. salsugineum v1.0
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  181
Name:  ? Thhalv10028011m.g Secondary Identifier:  ? PAC:20189607
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10028011m.g 0.5kb upstream 0.5kb upstream 1499 true scaffold_14: 3169969-3171467 Eutrema salsugineum
Thhalv10028011m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 3169969-3170468 Eutrema salsugineum
Thhalv10028011m.g 0.5kb downstream 0.5kb downstream 1499 true scaffold_14: 3170469-3171967 Eutrema salsugineum
Thhalv10028011m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 3171468-3171967 Eutrema salsugineum
Thhalv10028011m.g 1.0kb upstream 1.0kb upstream 1999 true scaffold_14: 3169469-3171467 Eutrema salsugineum
Thhalv10028011m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 3169469-3170468 Eutrema salsugineum
Thhalv10028011m.g 1.0kb downstream 1.0kb downstream 1999 true scaffold_14: 3170469-3172467 Eutrema salsugineum
Thhalv10028011m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 3171468-3172467 Eutrema salsugineum
Thhalv10028011m.g 2.0kb upstream 2.0kb upstream 2999 true scaffold_14: 3168469-3171467 Eutrema salsugineum
Thhalv10028011m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 3168469-3170468 Eutrema salsugineum
Thhalv10028011m.g 2.0kb downstream 2.0kb downstream 2999 true scaffold_14: 3170469-3173467 Eutrema salsugineum
Thhalv10028011m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 3171468-3173467 Eutrema salsugineum
Thhalv10028011m.g 5.0kb upstream 5.0kb upstream 5999 true scaffold_14: 3165469-3171467 Eutrema salsugineum
Thhalv10028011m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 3165469-3170468 Eutrema salsugineum
Thhalv10028011m.g 5.0kb downstream 5.0kb downstream 5999 true scaffold_14: 3170469-3176467 Eutrema salsugineum
Thhalv10028011m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 3171468-3176467 Eutrema salsugineum
Thhalv10028011m.g 10.0kb upstream 10.0kb upstream 10999 true scaffold_14: 3160469-3171467 Eutrema salsugineum
Thhalv10028011m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 3160469-3170468 Eutrema salsugineum
Thhalv10028011m.g 10.0kb downstream 10.0kb downstream 10999 true scaffold_14: 3170469-3181467 Eutrema salsugineum
Thhalv10028011m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 3171468-3181467 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376328 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain