Gene : Thhalv10011056m.g E. salsugineum v1.0
Defline:  (1 of 2) PTHR33180:SF4 - PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEIN Genomic Order:  979
Name:  ? Thhalv10011056m.g Secondary Identifier:  ? PAC:20207264
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10011056m.g 0.5kb upstream 0.5kb upstream 1552 true scaffold_16: 5930710-5932261 Eutrema salsugineum
Thhalv10011056m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_16: 5931762-5932261 Eutrema salsugineum
Thhalv10011056m.g 0.5kb downstream 0.5kb downstream 1552 true scaffold_16: 5930210-5931761 Eutrema salsugineum
Thhalv10011056m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_16: 5930210-5930709 Eutrema salsugineum
Thhalv10011056m.g 1.0kb upstream 1.0kb upstream 2052 true scaffold_16: 5930710-5932761 Eutrema salsugineum
Thhalv10011056m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_16: 5931762-5932761 Eutrema salsugineum
Thhalv10011056m.g 1.0kb downstream 1.0kb downstream 2052 true scaffold_16: 5929710-5931761 Eutrema salsugineum
Thhalv10011056m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_16: 5929710-5930709 Eutrema salsugineum
Thhalv10011056m.g 2.0kb upstream 2.0kb upstream 3052 true scaffold_16: 5930710-5933761 Eutrema salsugineum
Thhalv10011056m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_16: 5931762-5933761 Eutrema salsugineum
Thhalv10011056m.g 2.0kb downstream 2.0kb downstream 3052 true scaffold_16: 5928710-5931761 Eutrema salsugineum
Thhalv10011056m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_16: 5928710-5930709 Eutrema salsugineum
Thhalv10011056m.g 5.0kb upstream 5.0kb upstream 6052 true scaffold_16: 5930710-5936761 Eutrema salsugineum
Thhalv10011056m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_16: 5931762-5936761 Eutrema salsugineum
Thhalv10011056m.g 5.0kb downstream 5.0kb downstream 6052 true scaffold_16: 5925710-5931761 Eutrema salsugineum
Thhalv10011056m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_16: 5925710-5930709 Eutrema salsugineum
Thhalv10011056m.g 10.0kb upstream 10.0kb upstream 11052 true scaffold_16: 5930710-5941761 Eutrema salsugineum
Thhalv10011056m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_16: 5931762-5941761 Eutrema salsugineum
Thhalv10011056m.g 10.0kb downstream 10.0kb downstream 11052 true scaffold_16: 5920710-5931761 Eutrema salsugineum
Thhalv10011056m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_16: 5920710-5930709 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122357573 5261 Brassicaceae Singleton cluster - no MSA
123795610 5264 Brassicales-Malvales Singleton cluster - no MSA
124293392 5266 SBM Singleton cluster - no MSA
124250565 5268 Malvidae View MSA
123952521 5270 Rosid View MSA
123751197 5271 Pentapetalae View MSA
122773946 5272 Eudicot View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain