Gene : Thhalv10005900m.g E. salsugineum v1.0
Defline:  (1 of 2) PTHR11451:SF21 - BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE Genomic Order:  126
Name:  ? Thhalv10005900m.g Secondary Identifier:  ? PAC:20190206
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum TRNA-CHARGING-PWY Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10005900m.g 0.5kb upstream 0.5kb upstream 4224 true scaffold_19: 446395-450618 Eutrema salsugineum
Thhalv10005900m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_19: 446395-446894 Eutrema salsugineum
Thhalv10005900m.g 0.5kb downstream 0.5kb downstream 4224 true scaffold_19: 446895-451118 Eutrema salsugineum
Thhalv10005900m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_19: 450619-451118 Eutrema salsugineum
Thhalv10005900m.g 1.0kb upstream 1.0kb upstream 4724 true scaffold_19: 445895-450618 Eutrema salsugineum
Thhalv10005900m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_19: 445895-446894 Eutrema salsugineum
Thhalv10005900m.g 1.0kb downstream 1.0kb downstream 4724 true scaffold_19: 446895-451618 Eutrema salsugineum
Thhalv10005900m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_19: 450619-451618 Eutrema salsugineum
Thhalv10005900m.g 2.0kb upstream 2.0kb upstream 5724 true scaffold_19: 444895-450618 Eutrema salsugineum
Thhalv10005900m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_19: 444895-446894 Eutrema salsugineum
Thhalv10005900m.g 2.0kb downstream 2.0kb downstream 5724 true scaffold_19: 446895-452618 Eutrema salsugineum
Thhalv10005900m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_19: 450619-452618 Eutrema salsugineum
Thhalv10005900m.g 5.0kb upstream 5.0kb upstream 8724 true scaffold_19: 441895-450618 Eutrema salsugineum
Thhalv10005900m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_19: 441895-446894 Eutrema salsugineum
Thhalv10005900m.g 5.0kb downstream 5.0kb downstream 8724 true scaffold_19: 446895-455618 Eutrema salsugineum
Thhalv10005900m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_19: 450619-455618 Eutrema salsugineum
Thhalv10005900m.g 10.0kb upstream 10.0kb upstream 13724 true scaffold_19: 436895-450618 Eutrema salsugineum
Thhalv10005900m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_19: 436895-446894 Eutrema salsugineum
Thhalv10005900m.g 10.0kb downstream 10.0kb downstream 13724 true scaffold_19: 446895-460618 Eutrema salsugineum
Thhalv10005900m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_19: 450619-460618 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365316 5261 Brassicaceae View MSA
123831041 5264 Brassicales-Malvales View MSA
124348511 5266 SBM View MSA
124247467 5268 Malvidae View MSA
124064223 5270 Rosid View MSA
123739091 5271 Pentapetalae View MSA
122787738 5272 Eudicot View MSA
122046547 5273 Angiosperm View MSA
121346675 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain