Gene : Thhalv10022462m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR24096:SF169 - 4-COUMARATE--COA LIGASE 3 Genomic Order:  8
Name:  ? Thhalv10022462m.g Secondary Identifier:  ? PAC:20202502
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-1121 Eutrema salsugineum pathologic  
Esalsugineum PWY1F-FLAVSYN Eutrema salsugineum pathologic  
Esalsugineum PWY-361 Eutrema salsugineum pathologic  
Esalsugineum PWY-6435 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10022462m.g 0.5kb upstream 0.5kb upstream 5891 true scaffold_24: 645045-650935 Eutrema salsugineum
Thhalv10022462m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_24: 650436-650935 Eutrema salsugineum
Thhalv10022462m.g 0.5kb downstream 0.5kb downstream 5891 true scaffold_24: 644545-650435 Eutrema salsugineum
Thhalv10022462m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_24: 644545-645044 Eutrema salsugineum
Thhalv10022462m.g 1.0kb upstream 1.0kb upstream 6391 true scaffold_24: 645045-651435 Eutrema salsugineum
Thhalv10022462m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_24: 650436-651435 Eutrema salsugineum
Thhalv10022462m.g 1.0kb downstream 1.0kb downstream 6391 true scaffold_24: 644045-650435 Eutrema salsugineum
Thhalv10022462m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_24: 644045-645044 Eutrema salsugineum
Thhalv10022462m.g 2.0kb upstream 2.0kb upstream 7391 true scaffold_24: 645045-652435 Eutrema salsugineum
Thhalv10022462m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_24: 650436-652435 Eutrema salsugineum
Thhalv10022462m.g 2.0kb downstream 2.0kb downstream 7391 true scaffold_24: 643045-650435 Eutrema salsugineum
Thhalv10022462m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_24: 643045-645044 Eutrema salsugineum
Thhalv10022462m.g 5.0kb upstream 5.0kb upstream 10391 true scaffold_24: 645045-655435 Eutrema salsugineum
Thhalv10022462m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_24: 650436-655435 Eutrema salsugineum
Thhalv10022462m.g 5.0kb downstream 5.0kb downstream 10391 true scaffold_24: 640045-650435 Eutrema salsugineum
Thhalv10022462m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_24: 640045-645044 Eutrema salsugineum
Thhalv10022462m.g 10.0kb upstream 10.0kb upstream 15391 true scaffold_24: 645045-660435 Eutrema salsugineum
Thhalv10022462m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_24: 650436-660435 Eutrema salsugineum
Thhalv10022462m.g 10.0kb downstream 10.0kb downstream 15391 true scaffold_24: 635045-650435 Eutrema salsugineum
Thhalv10022462m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_24: 635045-645044 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374575 5261 Brassicaceae View MSA
123829315 5264 Brassicales-Malvales View MSA
124337093 5266 SBM View MSA
124239638 5268 Malvidae View MSA
124063529 5270 Rosid View MSA
123738118 5271 Pentapetalae View MSA
122792374 5272 Eudicot View MSA
122048251 5273 Angiosperm View MSA
121345883 5274 Embryophyte View MSA
123380283 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain