Gene : Thhalv10002469m.g E. salsugineum v1.0
Defline:  (1 of 3) PF01485//PF13456 - IBR domain, a half RING-finger domain (IBR) // Reverse transcriptase-like (RVT_3) Genomic Order:  559
Name:  ? Thhalv10002469m.g Secondary Identifier:  ? PAC:20196639
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-7511 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10002469m.g 0.5kb upstream 0.5kb upstream 2890 true scaffold_4: 10190345-10193234 Eutrema salsugineum
Thhalv10002469m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 10190345-10190844 Eutrema salsugineum
Thhalv10002469m.g 0.5kb downstream 0.5kb downstream 2890 true scaffold_4: 10190845-10193734 Eutrema salsugineum
Thhalv10002469m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 10193235-10193734 Eutrema salsugineum
Thhalv10002469m.g 1.0kb upstream 1.0kb upstream 3390 true scaffold_4: 10189845-10193234 Eutrema salsugineum
Thhalv10002469m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 10189845-10190844 Eutrema salsugineum
Thhalv10002469m.g 1.0kb downstream 1.0kb downstream 3390 true scaffold_4: 10190845-10194234 Eutrema salsugineum
Thhalv10002469m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 10193235-10194234 Eutrema salsugineum
Thhalv10002469m.g 2.0kb upstream 2.0kb upstream 4390 true scaffold_4: 10188845-10193234 Eutrema salsugineum
Thhalv10002469m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 10188845-10190844 Eutrema salsugineum
Thhalv10002469m.g 2.0kb downstream 2.0kb downstream 4390 true scaffold_4: 10190845-10195234 Eutrema salsugineum
Thhalv10002469m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 10193235-10195234 Eutrema salsugineum
Thhalv10002469m.g 5.0kb upstream 5.0kb upstream 7390 true scaffold_4: 10185845-10193234 Eutrema salsugineum
Thhalv10002469m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 10185845-10190844 Eutrema salsugineum
Thhalv10002469m.g 5.0kb downstream 5.0kb downstream 7390 true scaffold_4: 10190845-10198234 Eutrema salsugineum
Thhalv10002469m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 10193235-10198234 Eutrema salsugineum
Thhalv10002469m.g 10.0kb upstream 10.0kb upstream 12390 true scaffold_4: 10180845-10193234 Eutrema salsugineum
Thhalv10002469m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 10180845-10190844 Eutrema salsugineum
Thhalv10002469m.g 10.0kb downstream 10.0kb downstream 12390 true scaffold_4: 10190845-10203234 Eutrema salsugineum
Thhalv10002469m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 10193235-10203234 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361449 5261 Brassicaceae View MSA
123841442 5264 Brassicales-Malvales View MSA
124346701 5266 SBM View MSA
124252751 5268 Malvidae View MSA
124068077 5270 Rosid View MSA
123752192 5271 Pentapetalae View MSA
122796967 5272 Eudicot View MSA
122046828 5273 Angiosperm View MSA
123429065 5275 Viridiplantae View MSA
121348618 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain