Gene : Thhalv10002847m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR33149:SF4 - PHOTOSYSTEM Q(B) PROTEIN Genomic Order:  57
Name:  ? Thhalv10002847m.g Secondary Identifier:  ? PAC:20196864
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PHOTOALL-PWY Eutrema salsugineum pathologic  
Esalsugineum PWY-101 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10002847m.g 0.5kb upstream 0.5kb upstream 992 true scaffold_4: 2916517-2917508 Eutrema salsugineum
Thhalv10002847m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 2917009-2917508 Eutrema salsugineum
Thhalv10002847m.g 0.5kb downstream 0.5kb downstream 992 true scaffold_4: 2916017-2917008 Eutrema salsugineum
Thhalv10002847m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 2916017-2916516 Eutrema salsugineum
Thhalv10002847m.g 1.0kb upstream 1.0kb upstream 1492 true scaffold_4: 2916517-2918008 Eutrema salsugineum
Thhalv10002847m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 2917009-2918008 Eutrema salsugineum
Thhalv10002847m.g 1.0kb downstream 1.0kb downstream 1492 true scaffold_4: 2915517-2917008 Eutrema salsugineum
Thhalv10002847m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 2915517-2916516 Eutrema salsugineum
Thhalv10002847m.g 2.0kb upstream 2.0kb upstream 2492 true scaffold_4: 2916517-2919008 Eutrema salsugineum
Thhalv10002847m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 2917009-2919008 Eutrema salsugineum
Thhalv10002847m.g 2.0kb downstream 2.0kb downstream 2492 true scaffold_4: 2914517-2917008 Eutrema salsugineum
Thhalv10002847m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 2914517-2916516 Eutrema salsugineum
Thhalv10002847m.g 5.0kb upstream 5.0kb upstream 5492 true scaffold_4: 2916517-2922008 Eutrema salsugineum
Thhalv10002847m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 2917009-2922008 Eutrema salsugineum
Thhalv10002847m.g 5.0kb downstream 5.0kb downstream 5492 true scaffold_4: 2911517-2917008 Eutrema salsugineum
Thhalv10002847m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 2911517-2916516 Eutrema salsugineum
Thhalv10002847m.g 10.0kb upstream 10.0kb upstream 10492 true scaffold_4: 2916517-2927008 Eutrema salsugineum
Thhalv10002847m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 2917009-2927008 Eutrema salsugineum
Thhalv10002847m.g 10.0kb downstream 10.0kb downstream 10492 true scaffold_4: 2906517-2917008 Eutrema salsugineum
Thhalv10002847m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 2906517-2916516 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122358569 5261 Brassicaceae Singleton cluster - no MSA
123839089 5264 Brassicales-Malvales View MSA
124322551 5266 SBM View MSA
124254478 5268 Malvidae View MSA
124040377 5270 Rosid View MSA
123751275 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain