Gene : Thhalv10007587m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR33970:SF1 - VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC Genomic Order:  2410
Name:  ? Thhalv10007587m.g Secondary Identifier:  ? PAC:20186928
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum CAROTENOID-PWY Eutrema salsugineum pathologic  
Esalsugineum PWY-5945 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10007587m.g 0.5kb upstream 0.5kb upstream 3946 true scaffold_5: 12878562-12882507 Eutrema salsugineum
Thhalv10007587m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12882008-12882507 Eutrema salsugineum
Thhalv10007587m.g 0.5kb downstream 0.5kb downstream 3946 true scaffold_5: 12878062-12882007 Eutrema salsugineum
Thhalv10007587m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12878062-12878561 Eutrema salsugineum
Thhalv10007587m.g 1.0kb upstream 1.0kb upstream 4446 true scaffold_5: 12878562-12883007 Eutrema salsugineum
Thhalv10007587m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12882008-12883007 Eutrema salsugineum
Thhalv10007587m.g 1.0kb downstream 1.0kb downstream 4446 true scaffold_5: 12877562-12882007 Eutrema salsugineum
Thhalv10007587m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12877562-12878561 Eutrema salsugineum
Thhalv10007587m.g 2.0kb upstream 2.0kb upstream 5446 true scaffold_5: 12878562-12884007 Eutrema salsugineum
Thhalv10007587m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12882008-12884007 Eutrema salsugineum
Thhalv10007587m.g 2.0kb downstream 2.0kb downstream 5446 true scaffold_5: 12876562-12882007 Eutrema salsugineum
Thhalv10007587m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12876562-12878561 Eutrema salsugineum
Thhalv10007587m.g 5.0kb upstream 5.0kb upstream 8446 true scaffold_5: 12878562-12887007 Eutrema salsugineum
Thhalv10007587m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12882008-12887007 Eutrema salsugineum
Thhalv10007587m.g 5.0kb downstream 5.0kb downstream 8446 true scaffold_5: 12873562-12882007 Eutrema salsugineum
Thhalv10007587m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12873562-12878561 Eutrema salsugineum
Thhalv10007587m.g 10.0kb upstream 10.0kb upstream 13446 true scaffold_5: 12878562-12892007 Eutrema salsugineum
Thhalv10007587m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12882008-12892007 Eutrema salsugineum
Thhalv10007587m.g 10.0kb downstream 10.0kb downstream 13446 true scaffold_5: 12868562-12882007 Eutrema salsugineum
Thhalv10007587m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12868562-12878561 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369962 5261 Brassicaceae View MSA
123830593 5264 Brassicales-Malvales View MSA
124344334 5266 SBM View MSA
124238340 5268 Malvidae View MSA
124063145 5270 Rosid View MSA
123739304 5271 Pentapetalae View MSA
122790516 5272 Eudicot View MSA
122041813 5273 Angiosperm View MSA
121344367 5274 Embryophyte View MSA
123425421 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain