Gene : Thhalv10009090m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR34195:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC Genomic Order:  463
Name:  ? Thhalv10009090m.g Secondary Identifier:  ? PAC:20187518
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PHOTOALL-PWY Eutrema salsugineum pathologic  
Esalsugineum PWY-101 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10009090m.g 0.5kb upstream 0.5kb upstream 2545 true scaffold_5: 4418063-4420607 Eutrema salsugineum
Thhalv10009090m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4420108-4420607 Eutrema salsugineum
Thhalv10009090m.g 0.5kb downstream 0.5kb downstream 2545 true scaffold_5: 4417563-4420107 Eutrema salsugineum
Thhalv10009090m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4417563-4418062 Eutrema salsugineum
Thhalv10009090m.g 1.0kb upstream 1.0kb upstream 3045 true scaffold_5: 4418063-4421107 Eutrema salsugineum
Thhalv10009090m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4420108-4421107 Eutrema salsugineum
Thhalv10009090m.g 1.0kb downstream 1.0kb downstream 3045 true scaffold_5: 4417063-4420107 Eutrema salsugineum
Thhalv10009090m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4417063-4418062 Eutrema salsugineum
Thhalv10009090m.g 2.0kb upstream 2.0kb upstream 4045 true scaffold_5: 4418063-4422107 Eutrema salsugineum
Thhalv10009090m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4420108-4422107 Eutrema salsugineum
Thhalv10009090m.g 2.0kb downstream 2.0kb downstream 4045 true scaffold_5: 4416063-4420107 Eutrema salsugineum
Thhalv10009090m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4416063-4418062 Eutrema salsugineum
Thhalv10009090m.g 5.0kb upstream 5.0kb upstream 7045 true scaffold_5: 4418063-4425107 Eutrema salsugineum
Thhalv10009090m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4420108-4425107 Eutrema salsugineum
Thhalv10009090m.g 5.0kb downstream 5.0kb downstream 7045 true scaffold_5: 4413063-4420107 Eutrema salsugineum
Thhalv10009090m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4413063-4418062 Eutrema salsugineum
Thhalv10009090m.g 10.0kb upstream 10.0kb upstream 12045 true scaffold_5: 4418063-4430107 Eutrema salsugineum
Thhalv10009090m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4420108-4430107 Eutrema salsugineum
Thhalv10009090m.g 10.0kb downstream 10.0kb downstream 12045 true scaffold_5: 4408063-4420107 Eutrema salsugineum
Thhalv10009090m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4408063-4418062 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378578 5261 Brassicaceae View MSA
123833502 5264 Brassicales-Malvales View MSA
124342197 5266 SBM View MSA
124242965 5268 Malvidae View MSA
124064022 5270 Rosid View MSA
123739111 5271 Pentapetalae View MSA
122786435 5272 Eudicot View MSA
122044551 5273 Angiosperm View MSA
121347312 5274 Embryophyte View MSA
123425033 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain