Gene : Thhalv10005005m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR36814:SF1 - PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC Genomic Order:  371
Name:  ? Thhalv10005005m.g Secondary Identifier:  ? PAC:20199202
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PHOTOALL-PWY Eutrema salsugineum pathologic  
Esalsugineum PWY-101 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10005005m.g 0.5kb upstream 0.5kb upstream 1636 true scaffold_6: 1425673-1427308 Eutrema salsugineum
Thhalv10005005m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1425673-1426172 Eutrema salsugineum
Thhalv10005005m.g 0.5kb downstream 0.5kb downstream 1636 true scaffold_6: 1426173-1427808 Eutrema salsugineum
Thhalv10005005m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1427309-1427808 Eutrema salsugineum
Thhalv10005005m.g 1.0kb upstream 1.0kb upstream 2136 true scaffold_6: 1425173-1427308 Eutrema salsugineum
Thhalv10005005m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1425173-1426172 Eutrema salsugineum
Thhalv10005005m.g 1.0kb downstream 1.0kb downstream 2136 true scaffold_6: 1426173-1428308 Eutrema salsugineum
Thhalv10005005m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1427309-1428308 Eutrema salsugineum
Thhalv10005005m.g 2.0kb upstream 2.0kb upstream 3136 true scaffold_6: 1424173-1427308 Eutrema salsugineum
Thhalv10005005m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1424173-1426172 Eutrema salsugineum
Thhalv10005005m.g 2.0kb downstream 2.0kb downstream 3136 true scaffold_6: 1426173-1429308 Eutrema salsugineum
Thhalv10005005m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1427309-1429308 Eutrema salsugineum
Thhalv10005005m.g 5.0kb upstream 5.0kb upstream 6136 true scaffold_6: 1421173-1427308 Eutrema salsugineum
Thhalv10005005m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1421173-1426172 Eutrema salsugineum
Thhalv10005005m.g 5.0kb downstream 5.0kb downstream 6136 true scaffold_6: 1426173-1432308 Eutrema salsugineum
Thhalv10005005m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1427309-1432308 Eutrema salsugineum
Thhalv10005005m.g 10.0kb upstream 10.0kb upstream 11136 true scaffold_6: 1416173-1427308 Eutrema salsugineum
Thhalv10005005m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1416173-1426172 Eutrema salsugineum
Thhalv10005005m.g 10.0kb downstream 10.0kb downstream 11136 true scaffold_6: 1426173-1437308 Eutrema salsugineum
Thhalv10005005m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1427309-1437308 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379463 5261 Brassicaceae View MSA
123830230 5264 Brassicales-Malvales View MSA
124345790 5266 SBM View MSA
124247840 5268 Malvidae View MSA
124061914 5270 Rosid View MSA
123739503 5271 Pentapetalae View MSA
122786700 5272 Eudicot View MSA
122046387 5273 Angiosperm View MSA
121346900 5274 Embryophyte View MSA
123425334 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain