Gene : Thhalv10011205m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR11777:SF18 - ALANINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  551
Name:  ? Thhalv10011205m.g Secondary Identifier:  ? PAC:20185194
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum TRNA-CHARGING-PWY Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10011205m.g 0.5kb upstream 0.5kb upstream 7480 true scaffold_7: 3052315-3059794 Eutrema salsugineum
Thhalv10011205m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 3052315-3052814 Eutrema salsugineum
Thhalv10011205m.g 0.5kb downstream 0.5kb downstream 7480 true scaffold_7: 3052815-3060294 Eutrema salsugineum
Thhalv10011205m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 3059795-3060294 Eutrema salsugineum
Thhalv10011205m.g 1.0kb upstream 1.0kb upstream 7980 true scaffold_7: 3051815-3059794 Eutrema salsugineum
Thhalv10011205m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 3051815-3052814 Eutrema salsugineum
Thhalv10011205m.g 1.0kb downstream 1.0kb downstream 7980 true scaffold_7: 3052815-3060794 Eutrema salsugineum
Thhalv10011205m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 3059795-3060794 Eutrema salsugineum
Thhalv10011205m.g 2.0kb upstream 2.0kb upstream 8980 true scaffold_7: 3050815-3059794 Eutrema salsugineum
Thhalv10011205m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 3050815-3052814 Eutrema salsugineum
Thhalv10011205m.g 2.0kb downstream 2.0kb downstream 8980 true scaffold_7: 3052815-3061794 Eutrema salsugineum
Thhalv10011205m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 3059795-3061794 Eutrema salsugineum
Thhalv10011205m.g 5.0kb upstream 5.0kb upstream 11980 true scaffold_7: 3047815-3059794 Eutrema salsugineum
Thhalv10011205m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 3047815-3052814 Eutrema salsugineum
Thhalv10011205m.g 5.0kb downstream 5.0kb downstream 11980 true scaffold_7: 3052815-3064794 Eutrema salsugineum
Thhalv10011205m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 3059795-3064794 Eutrema salsugineum
Thhalv10011205m.g 10.0kb upstream 10.0kb upstream 16980 true scaffold_7: 3042815-3059794 Eutrema salsugineum
Thhalv10011205m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 3042815-3052814 Eutrema salsugineum
Thhalv10011205m.g 10.0kb downstream 10.0kb downstream 16980 true scaffold_7: 3052815-3069794 Eutrema salsugineum
Thhalv10011205m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 3059795-3069794 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364421 5261 Brassicaceae View MSA
123830021 5264 Brassicales-Malvales View MSA
124341952 5266 SBM View MSA
124240298 5268 Malvidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain