Gene : Thhalv10011515m.g E. salsugineum v1.0
Defline:  (1 of 3) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  590
Name:  ? Thhalv10011515m.g Secondary Identifier:  ? PAC:20185029
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-7511 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10011515m.g 0.5kb upstream 0.5kb upstream 1769 true scaffold_7: 3355478-3357246 Eutrema salsugineum
Thhalv10011515m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 3355478-3355977 Eutrema salsugineum
Thhalv10011515m.g 0.5kb downstream 0.5kb downstream 1769 true scaffold_7: 3355978-3357746 Eutrema salsugineum
Thhalv10011515m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 3357247-3357746 Eutrema salsugineum
Thhalv10011515m.g 1.0kb upstream 1.0kb upstream 2269 true scaffold_7: 3354978-3357246 Eutrema salsugineum
Thhalv10011515m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 3354978-3355977 Eutrema salsugineum
Thhalv10011515m.g 1.0kb downstream 1.0kb downstream 2269 true scaffold_7: 3355978-3358246 Eutrema salsugineum
Thhalv10011515m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 3357247-3358246 Eutrema salsugineum
Thhalv10011515m.g 2.0kb upstream 2.0kb upstream 3269 true scaffold_7: 3353978-3357246 Eutrema salsugineum
Thhalv10011515m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 3353978-3355977 Eutrema salsugineum
Thhalv10011515m.g 2.0kb downstream 2.0kb downstream 3269 true scaffold_7: 3355978-3359246 Eutrema salsugineum
Thhalv10011515m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 3357247-3359246 Eutrema salsugineum
Thhalv10011515m.g 5.0kb upstream 5.0kb upstream 6269 true scaffold_7: 3350978-3357246 Eutrema salsugineum
Thhalv10011515m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 3350978-3355977 Eutrema salsugineum
Thhalv10011515m.g 5.0kb downstream 5.0kb downstream 6269 true scaffold_7: 3355978-3362246 Eutrema salsugineum
Thhalv10011515m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 3357247-3362246 Eutrema salsugineum
Thhalv10011515m.g 10.0kb upstream 10.0kb upstream 11269 true scaffold_7: 3345978-3357246 Eutrema salsugineum
Thhalv10011515m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 3345978-3355977 Eutrema salsugineum
Thhalv10011515m.g 10.0kb downstream 10.0kb downstream 11269 true scaffold_7: 3355978-3367246 Eutrema salsugineum
Thhalv10011515m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 3357247-3367246 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369304 5261 Brassicaceae View MSA
123836099 5264 Brassicales-Malvales View MSA
124342349 5266 SBM View MSA
124246737 5268 Malvidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain