Gene : Thhalv10018267m.g E. salsugineum v1.0
Defline:  (1 of 2) PTHR10277//PTHR10277:SF42 - HOMOCITRATE SYNTHASE-RELATED Genomic Order:  675
Name:  ? Thhalv10018267m.g Secondary Identifier:  ? PAC:20192296
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum BRANCHED-CHAIN-AA-SYN-PWY Eutrema salsugineum pathologic  
Esalsugineum LEUSYN-PWY Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10018267m.g 0.5kb upstream 0.5kb upstream 4253 true scaffold_9: 2876868-2881120 Eutrema salsugineum
Thhalv10018267m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2880621-2881120 Eutrema salsugineum
Thhalv10018267m.g 0.5kb downstream 0.5kb downstream 4253 true scaffold_9: 2876368-2880620 Eutrema salsugineum
Thhalv10018267m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2876368-2876867 Eutrema salsugineum
Thhalv10018267m.g 1.0kb upstream 1.0kb upstream 4753 true scaffold_9: 2876868-2881620 Eutrema salsugineum
Thhalv10018267m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2880621-2881620 Eutrema salsugineum
Thhalv10018267m.g 1.0kb downstream 1.0kb downstream 4753 true scaffold_9: 2875868-2880620 Eutrema salsugineum
Thhalv10018267m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2875868-2876867 Eutrema salsugineum
Thhalv10018267m.g 2.0kb upstream 2.0kb upstream 5753 true scaffold_9: 2876868-2882620 Eutrema salsugineum
Thhalv10018267m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2880621-2882620 Eutrema salsugineum
Thhalv10018267m.g 2.0kb downstream 2.0kb downstream 5753 true scaffold_9: 2874868-2880620 Eutrema salsugineum
Thhalv10018267m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2874868-2876867 Eutrema salsugineum
Thhalv10018267m.g 5.0kb upstream 5.0kb upstream 8753 true scaffold_9: 2876868-2885620 Eutrema salsugineum
Thhalv10018267m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2880621-2885620 Eutrema salsugineum
Thhalv10018267m.g 5.0kb downstream 5.0kb downstream 8753 true scaffold_9: 2871868-2880620 Eutrema salsugineum
Thhalv10018267m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2871868-2876867 Eutrema salsugineum
Thhalv10018267m.g 10.0kb upstream 10.0kb upstream 13753 true scaffold_9: 2876868-2890620 Eutrema salsugineum
Thhalv10018267m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2880621-2890620 Eutrema salsugineum
Thhalv10018267m.g 10.0kb downstream 10.0kb downstream 13753 true scaffold_9: 2866868-2880620 Eutrema salsugineum
Thhalv10018267m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2866868-2876867 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376222 5261 Brassicaceae View MSA
123837144 5264 Brassicales-Malvales View MSA
124322248 5266 SBM View MSA
124251393 5268 Malvidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain