Gene : Thhalv10019707m.g E. salsugineum v1.0
Defline:  (1 of 2) PTHR10543:SF26 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED Genomic Order:  249
Name:  ? Thhalv10019707m.g Secondary Identifier:  ? PAC:20191861
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-695 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10019707m.g 0.5kb upstream 0.5kb upstream 2336 true scaffold_9: 966986-969321 Eutrema salsugineum
Thhalv10019707m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 966986-967485 Eutrema salsugineum
Thhalv10019707m.g 0.5kb downstream 0.5kb downstream 2336 true scaffold_9: 967486-969821 Eutrema salsugineum
Thhalv10019707m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 969322-969821 Eutrema salsugineum
Thhalv10019707m.g 1.0kb upstream 1.0kb upstream 2836 true scaffold_9: 966486-969321 Eutrema salsugineum
Thhalv10019707m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 966486-967485 Eutrema salsugineum
Thhalv10019707m.g 1.0kb downstream 1.0kb downstream 2836 true scaffold_9: 967486-970321 Eutrema salsugineum
Thhalv10019707m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 969322-970321 Eutrema salsugineum
Thhalv10019707m.g 2.0kb upstream 2.0kb upstream 3836 true scaffold_9: 965486-969321 Eutrema salsugineum
Thhalv10019707m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 965486-967485 Eutrema salsugineum
Thhalv10019707m.g 2.0kb downstream 2.0kb downstream 3836 true scaffold_9: 967486-971321 Eutrema salsugineum
Thhalv10019707m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 969322-971321 Eutrema salsugineum
Thhalv10019707m.g 5.0kb upstream 5.0kb upstream 6836 true scaffold_9: 962486-969321 Eutrema salsugineum
Thhalv10019707m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 962486-967485 Eutrema salsugineum
Thhalv10019707m.g 5.0kb downstream 5.0kb downstream 6836 true scaffold_9: 967486-974321 Eutrema salsugineum
Thhalv10019707m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 969322-974321 Eutrema salsugineum
Thhalv10019707m.g 10.0kb upstream 10.0kb upstream 11836 true scaffold_9: 957486-969321 Eutrema salsugineum
Thhalv10019707m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 957486-967485 Eutrema salsugineum
Thhalv10019707m.g 10.0kb downstream 10.0kb downstream 11836 true scaffold_9: 967486-979321 Eutrema salsugineum
Thhalv10019707m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 969322-979321 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366050 5261 Brassicaceae View MSA
123839521 5264 Brassicales-Malvales View MSA
124350973 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain