Protein Domain : IPR016184

Type:  Domain Name:  Capsid/spike protein, ssDNA virus
Description:  This entry represents a coat protein found in ssDNA viruses, such as the capsid protein F and the spike protein G in Microviridae [], the Parvovirus capsid protein [], the Dependovirus capsid protein [] and the Densovirus capsid protein []. These proteins share a beta-sandwich structure consisting of 8 beta-strands in two sheets with a jelly-roll fold, although some members can have an additional 1-2 strands; characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies. Short Name:  Capsid/spike_ssDNA_virus

1 Child Features

DB identifier Type Name
IPR001403 Domain Parvovirus coat protein VP2

0 Contains

1 Cross References

Identifier
SSF88645

3 Found Ins

DB identifier Type Name
IPR003514 Family Microviridae F protein
IPR003515 Family Major spike protein G
IPR003433 Family Capsid protein VP4

0 GO Annotation

0 Ontology Annotations

0 Parent Features

146 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
Thhalv10005481m V4MMP2 PAC:20199536 Eutrema salsugineum 320  
Lus10009062 PAC:23173361 Linum usitatissimum 994  
Traes_2AL_A3EBE65DA.2 PAC:31857708 Triticum aestivum 478  
Traes_2AL_A3EBE65DA.1 PAC:31857707 Triticum aestivum 488  
Traes_4BS_C5FACEDEA.1 PAC:31895337 Triticum aestivum 192  
Prupe.3G085400.1.p M5XBA0 PAC:32105583 Prunus persica 134  
Pahal.I02063.1 A0A2S3IIY5 PAC:32508925 Panicum hallii 245  
Pahal.A00942.1 PAC:32526470 Panicum hallii 182  
Sevir.9G120500.1.p A0A4V6D0S0 PAC:32657657 Setaria viridis 247  
Seita.9G121900.1.p K4AE81 PAC:32689516 Setaria italica 247  
Bradi1g11160.1.p I1GP49 PAC:32799565 Brachypodium distachyon 254  
Aco024631.1 PAC:33050350 Ananas comosus 279  
LOC_Os03g50080.1 PAC:33129790 Oryza sativa 252  
Brdisv1Per11001757m.p PAC:33227232 Brachypodium distachyon Per1 254  
Brdisv1Uni21001665m.p I1GP49 PAC:33266288 Brachypodium distachyon Uni2 254  
Brdisv1BdTR7a1001847m.p PAC:33340741 Brachypodium distachyon BdTR7a 254  
Brdisv1Koz-11001795m.p I1GP49 PAC:33396300 Brachypodium distachyon Koz-1 254  
Brdisv20Bd21Ref1001916m.p I1GP49 PAC:33448328 Brachypodium distachyon Bd21 AnntCtrl 254  
Brdisv1Tek-41001093m.p PAC:33481620 Brachypodium distachyon Tek-4 254  
Brdisv1ABR9_r1001775m.p PAC:33533317 Brachypodium distachyon ABR9 254  
Brdisv1BdTR13a1001746m.p I1GP49 PAC:33564323 Brachypodium distachyon BdTR13a 254  
Brdisv1pangenome1015234m.p I1GP49 PAC:33650784 Brachypodium distachyon Pangenome 254  
Brdisv1ABR6_r1001780m.p PAC:33676196 Brachypodium distachyon ABR6 254  
Brdisv1ABR21001783m.p I1GP49 PAC:33734079 Brachypodium distachyon ABR2 254  
Brdisv1Bis-11001733m.p PAC:33782444 Brachypodium distachyon Bis-1 254  
Brdisv1S8iiC1001739m.p PAC:33853769 Brachypodium distachyon S8iic 254  
Brdisv1Tek-21001667m.p PAC:33900250 Brachypodium distachyon Tek-2 254  
Brdisv1Kah-51001683m.p I1GP49 PAC:33946056 Brachypodium distachyon Kah-5 254  
Brdisv1ABR31001785m.p I1GP49 PAC:33987319 Brachypodium distachyon ABR3 254  
Brdisv1Bd30-11001760m.p PAC:34047311 Brachypodium distachyon Bd30-1 254  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9817847
            12473449
            12136130
            15289612