Protein Domain : IPR001403

Type:  Domain Name:  Parvovirus coat protein VP2
Description:  Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. The Parvovirus coat protein VP1 together with VP2 forms a capsomer. Both of these proteins are formed from the same transcript using alternative translation start codons. As a result, VP1 and VP2 differ only in the N terminus region. VP2 is involved in packaging the viral DNA []. The mature viron contains three capsid proteins VP1, VP2, and VP3 and a noncapsid protein NS1. VP3 may arise from a third start codon with a favorable translationinitiation context which is present at position 3067 in the ChPV genome and which has been described in the goose and Muscovy duck parvoviruses []. Short Name:  Parvovirus_coat

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF00740
G3DSA:2.170.30.10

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0005198 IPR001403
GO:0019028 IPR001403

2 Ontology Annotations

GO Term Gene Name
GO:0005198 IPR001403
GO:0019028 IPR001403

1 Parent Features

DB identifier Type Name
IPR016184 Domain Capsid/spike protein, ssDNA virus

618 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.model.supercontig_6.228 PAC:16423407 Carica papaya 239  
29222.m000406 B9SU75 PAC:16802509 Ricinus communis 249  
orange1.1g013905m PAC:18135173 Citrus sinensis 434  
AT3G58220.2 A0A178V776 PAC:19660119 Arabidopsis thaliana 453  
Lus10014800 PAC:23150226 Linum usitatissimum 378  
Potri.015G129600.1 B9ICV1 PAC:27019508 Populus trichocarpa 191  
Gorai.009G390800.1 A0A0D2TYY2 PAC:26767350 Gossypium raimondii 325  
Gorai.007G131200.1 A0A0D2P876 PAC:26783129 Gossypium raimondii 198  
Gorai.007G131200.2 A0A0D2P876 PAC:26783130 Gossypium raimondii 198  
64472 I0Z6X5 PAC:27393543 Coccomyxa subellipsoidea C-169 762  
106619 C1EJ61 PAC:27397034 Micromonas sp RCC299 295  
83398 C1EAG4 PAC:27404551 Micromonas sp RCC299 398  
Thecc1EG028756t1 A0A061GBM7 PAC:27437830 Theobroma cacao 192  
Thecc1EG031425t1 A0A061FEL3 PAC:27446273 Theobroma cacao 387  
Migut.M00819.1.p A0A022RY71 PAC:28950302 Mimulus guttatus 322  
Araha.3015s0005.1.p PAC:28859636 Arabidopsis halleri 353  
Araha.5299s0004.1.p PAC:28841676 Arabidopsis halleri 208  
Araha.45805s0001.1.p PAC:28840214 Arabidopsis halleri 164  
Cagra.1268s0053.1.p PAC:28893637 Capsella grandiflora 211  
Cagra.3166s0049.1.p PAC:28899697 Capsella grandiflora 297  
Cagra.7793s0003.1.p PAC:28906840 Capsella grandiflora 276  
Cagra.8807s0002.1.p PAC:28898623 Capsella grandiflora 286  
Brara.C04194.1.p A0A398A6K9 PAC:30615203 Brassica rapa FPsc 457  
Brara.J00871.1.p A0A397XJ84 PAC:30613339 Brassica rapa FPsc 348  
Bostr.29044s0023.1.p PAC:30651854 Boechera stricta 297  
Spipo6G0073600 PAC:31505942 Spirodela polyrhiza 223  
Spipo16G0034800 PAC:31516249 Spirodela polyrhiza 530  
Traes_1BL_60B33B3C8.1 PAC:31888635 Triticum aestivum 179  
Traes_1BL_85E4C2FE1.1 PAC:31969257 Triticum aestivum 243  
Traes_2BL_1B972CFFE.5 PAC:31767081 Triticum aestivum 217  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            20097398
            9129667