Gene : Ciclev10012528m.g C. clementina v1.0
Defline:  (1 of 3) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  1843
Name:  ? Ciclev10012528m.g Secondary Identifier:  ? PAC:20797976
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cclementina PWY-735 Citrus clementina pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Ciclev10012528m.g 0.5kb upstream 0.5kb upstream 1969 true scaffold_6: 23366803-23368771 Citrus clementina
Ciclev10012528m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 23368272-23368771 Citrus clementina
Ciclev10012528m.g 0.5kb downstream 0.5kb downstream 1969 true scaffold_6: 23366303-23368271 Citrus clementina
Ciclev10012528m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 23366303-23366802 Citrus clementina
Ciclev10012528m.g 1.0kb upstream 1.0kb upstream 2469 true scaffold_6: 23366803-23369271 Citrus clementina
Ciclev10012528m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 23368272-23369271 Citrus clementina
Ciclev10012528m.g 1.0kb downstream 1.0kb downstream 2469 true scaffold_6: 23365803-23368271 Citrus clementina
Ciclev10012528m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 23365803-23366802 Citrus clementina
Ciclev10012528m.g 2.0kb upstream 2.0kb upstream 3469 true scaffold_6: 23366803-23370271 Citrus clementina
Ciclev10012528m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 23368272-23370271 Citrus clementina
Ciclev10012528m.g 2.0kb downstream 2.0kb downstream 3469 true scaffold_6: 23364803-23368271 Citrus clementina
Ciclev10012528m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 23364803-23366802 Citrus clementina
Ciclev10012528m.g 5.0kb upstream 5.0kb upstream 6469 true scaffold_6: 23366803-23373271 Citrus clementina
Ciclev10012528m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 23368272-23373271 Citrus clementina
Ciclev10012528m.g 5.0kb downstream 5.0kb downstream 6469 true scaffold_6: 23361803-23368271 Citrus clementina
Ciclev10012528m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 23361803-23366802 Citrus clementina
Ciclev10012528m.g 10.0kb upstream 10.0kb upstream 11469 true scaffold_6: 23366803-23378271 Citrus clementina
Ciclev10012528m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 23368272-23378271 Citrus clementina
Ciclev10012528m.g 10.0kb downstream 10.0kb downstream 11469 true scaffold_6: 23356803-23368271 Citrus clementina
Ciclev10012528m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 23356803-23366802 Citrus clementina

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121526694 5273 Angiosperm Singleton cluster - no MSA
124325925 5266 SBM Singleton cluster - no MSA
124171362 5268 Malvidae Singleton cluster - no MSA
123894018 5270 Rosid Singleton cluster - no MSA
123475939 5271 Pentapetalae Singleton cluster - no MSA
122511193 5272 Eudicot Singleton cluster - no MSA
120799456 5274 Embryophyte Singleton cluster - no MSA
122841010 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain