Gene : Ciclev10019925m.g C. clementina v1.0
Defline:  (1 of 1) PTHR33970:SF1 - VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC Genomic Order:  3064
Name:  ? Ciclev10019925m.g Secondary Identifier:  ? PAC:20808256
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cclementina CAROTENOID-PWY Citrus clementina pathologic  
Cclementina PWY-5945 Citrus clementina pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Ciclev10019925m.g 0.5kb upstream 0.5kb upstream 5630 true scaffold_3: 40937225-40942854 Citrus clementina
Ciclev10019925m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 40937225-40937724 Citrus clementina
Ciclev10019925m.g 0.5kb downstream 0.5kb downstream 5630 true scaffold_3: 40937725-40943354 Citrus clementina
Ciclev10019925m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 40942855-40943354 Citrus clementina
Ciclev10019925m.g 1.0kb upstream 1.0kb upstream 6130 true scaffold_3: 40936725-40942854 Citrus clementina
Ciclev10019925m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 40936725-40937724 Citrus clementina
Ciclev10019925m.g 1.0kb downstream 1.0kb downstream 6130 true scaffold_3: 40937725-40943854 Citrus clementina
Ciclev10019925m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 40942855-40943854 Citrus clementina
Ciclev10019925m.g 2.0kb upstream 2.0kb upstream 7130 true scaffold_3: 40935725-40942854 Citrus clementina
Ciclev10019925m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 40935725-40937724 Citrus clementina
Ciclev10019925m.g 2.0kb downstream 2.0kb downstream 7130 true scaffold_3: 40937725-40944854 Citrus clementina
Ciclev10019925m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 40942855-40944854 Citrus clementina
Ciclev10019925m.g 5.0kb upstream 5.0kb upstream 10130 true scaffold_3: 40932725-40942854 Citrus clementina
Ciclev10019925m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 40932725-40937724 Citrus clementina
Ciclev10019925m.g 5.0kb downstream 5.0kb downstream 10130 true scaffold_3: 40937725-40947854 Citrus clementina
Ciclev10019925m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 40942855-40947854 Citrus clementina
Ciclev10019925m.g 10.0kb upstream 10.0kb upstream 15130 true scaffold_3: 40927725-40942854 Citrus clementina
Ciclev10019925m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 40927725-40937724 Citrus clementina
Ciclev10019925m.g 10.0kb downstream 10.0kb downstream 15130 true scaffold_3: 40937725-40952854 Citrus clementina
Ciclev10019925m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 40942855-40952854 Citrus clementina

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124344334 5266 SBM View MSA
124238340 5268 Malvidae View MSA
124063145 5270 Rosid View MSA
123739304 5271 Pentapetalae View MSA
122790516 5272 Eudicot View MSA
122041813 5273 Angiosperm View MSA
121344367 5274 Embryophyte View MSA
123425421 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain