Gene : Lus10017499.g L. usitatissimum v1.0
Defline:  (1 of 2) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  55
Name:  ? Lus10017499.g Secondary Identifier:  ? PAC:23163155
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lusitatissimum PWY-2541 Linum usitatissimum pathologic  
Lusitatissimum PWY-5670 Linum usitatissimum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lus10017499.g 0.5kb upstream 0.5kb upstream 4689 true scaffold1253: 257775-262463 Linum usitatissimum
Lus10017499.g 0.5kb upstream 0.5kb upstream 500 false scaffold1253: 257775-258274 Linum usitatissimum
Lus10017499.g 0.5kb downstream 0.5kb downstream 4689 true scaffold1253: 258275-262963 Linum usitatissimum
Lus10017499.g 0.5kb downstream 0.5kb downstream 500 false scaffold1253: 262464-262963 Linum usitatissimum
Lus10017499.g 1.0kb upstream 1.0kb upstream 5189 true scaffold1253: 257275-262463 Linum usitatissimum
Lus10017499.g 1.0kb upstream 1.0kb upstream 1000 false scaffold1253: 257275-258274 Linum usitatissimum
Lus10017499.g 1.0kb downstream 1.0kb downstream 5189 true scaffold1253: 258275-263463 Linum usitatissimum
Lus10017499.g 1.0kb downstream 1.0kb downstream 1000 false scaffold1253: 262464-263463 Linum usitatissimum
Lus10017499.g 2.0kb upstream 2.0kb upstream 6189 true scaffold1253: 256275-262463 Linum usitatissimum
Lus10017499.g 2.0kb upstream 2.0kb upstream 2000 false scaffold1253: 256275-258274 Linum usitatissimum
Lus10017499.g 2.0kb downstream 2.0kb downstream 6189 true scaffold1253: 258275-264463 Linum usitatissimum
Lus10017499.g 2.0kb downstream 2.0kb downstream 2000 false scaffold1253: 262464-264463 Linum usitatissimum
Lus10017499.g 5.0kb upstream 5.0kb upstream 9189 true scaffold1253: 253275-262463 Linum usitatissimum
Lus10017499.g 5.0kb upstream 5.0kb upstream 5000 false scaffold1253: 253275-258274 Linum usitatissimum
Lus10017499.g 5.0kb downstream 5.0kb downstream 9189 true scaffold1253: 258275-267463 Linum usitatissimum
Lus10017499.g 5.0kb downstream 5.0kb downstream 5000 false scaffold1253: 262464-267463 Linum usitatissimum
Lus10017499.g 10.0kb upstream 10.0kb upstream 14189 true scaffold1253: 248275-262463 Linum usitatissimum
Lus10017499.g 10.0kb upstream 10.0kb upstream 10000 false scaffold1253: 248275-258274 Linum usitatissimum
Lus10017499.g 10.0kb downstream 10.0kb downstream 14189 true scaffold1253: 258275-272463 Linum usitatissimum
Lus10017499.g 10.0kb downstream 10.0kb downstream 10000 false scaffold1253: 262464-272463 Linum usitatissimum

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122433750 5262 Malpighiales View MSA
124243687 5268 Malvidae View MSA
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain