Gene : Potri.003G132400 P. trichocarpa v3.0
Defline:  (1 of 2) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  1324
Name:  ? Potri.003G132400 Secondary Identifier:  ? PAC:26997748
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-7560 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.003G132400 0.5kb upstream 0.5kb upstream 3747   true Chr03: 15186567-15190313 Populus trichocarpa
Potri.003G132400 0.5kb upstream 0.5kb upstream 500   false Chr03: 15189814-15190313 Populus trichocarpa
Potri.003G132400 0.5kb downstream 0.5kb downstream 3747   true Chr03: 15186067-15189813 Populus trichocarpa
Potri.003G132400 0.5kb downstream 0.5kb downstream 500   false Chr03: 15186067-15186566 Populus trichocarpa
Potri.003G132400 1.0kb upstream 1.0kb upstream 4247   true Chr03: 15186567-15190813 Populus trichocarpa
Potri.003G132400 1.0kb upstream 1.0kb upstream 1000   false Chr03: 15189814-15190813 Populus trichocarpa
Potri.003G132400 1.0kb downstream 1.0kb downstream 4247   true Chr03: 15185567-15189813 Populus trichocarpa
Potri.003G132400 1.0kb downstream 1.0kb downstream 1000   false Chr03: 15185567-15186566 Populus trichocarpa
Potri.003G132400 2.0kb upstream 2.0kb upstream 5247   true Chr03: 15186567-15191813 Populus trichocarpa
Potri.003G132400 2.0kb upstream 2.0kb upstream 2000   false Chr03: 15189814-15191813 Populus trichocarpa
Potri.003G132400 2.0kb downstream 2.0kb downstream 5247   true Chr03: 15184567-15189813 Populus trichocarpa
Potri.003G132400 2.0kb downstream 2.0kb downstream 2000   false Chr03: 15184567-15186566 Populus trichocarpa
Potri.003G132400 5.0kb upstream 5.0kb upstream 8247   true Chr03: 15186567-15194813 Populus trichocarpa
Potri.003G132400 5.0kb upstream 5.0kb upstream 5000   false Chr03: 15189814-15194813 Populus trichocarpa
Potri.003G132400 5.0kb downstream 5.0kb downstream 8247   true Chr03: 15181567-15189813 Populus trichocarpa
Potri.003G132400 5.0kb downstream 5.0kb downstream 5000   false Chr03: 15181567-15186566 Populus trichocarpa
Potri.003G132400 10.0kb upstream 10.0kb upstream 13247   true Chr03: 15186567-15199813 Populus trichocarpa
Potri.003G132400 10.0kb upstream 10.0kb upstream 10000   false Chr03: 15189814-15199813 Populus trichocarpa
Potri.003G132400 10.0kb downstream 10.0kb downstream 13247   true Chr03: 15176567-15189813 Populus trichocarpa
Potri.003G132400 10.0kb downstream 10.0kb downstream 10000   false Chr03: 15176567-15186566 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.927     High  
cufflinks 19.64     High  
cufflinks 17.248     High  
cufflinks 29.748     High High
cufflinks 23.747     High High
cufflinks 3.929       Low
cufflinks 7.029        
cufflinks 7.884        
cufflinks 26.473     High High
cufflinks 4.761       Low
cufflinks 29.018     High High
cufflinks 13.188     High  
cufflinks 12.964     High  
cufflinks 10.922     High  
cufflinks 14.801     High  
cufflinks 8.691        
cufflinks 4.991       Low
cufflinks 5.926       Low
cufflinks 12.649     High  
cufflinks 9.682        
cufflinks 14.757     High  
cufflinks 14.869     High  
cufflinks 12.279     High  
cufflinks 10.087        
cufflinks 23.38        
cufflinks 23.471        
cufflinks 28.251     High  
cufflinks 24.13        
cufflinks 21.644        
cufflinks 21.713        

0 Strain