Gene : Potri.003G162200 P. trichocarpa v3.0
Defline:  (1 of 2) K00411 - ubiquinol-cytochrome c reductase iron-sulfur subunit (UQCRFS1, RIP1, petA) Genomic Order:  1622
Name:  ? Potri.003G162200 Secondary Identifier:  ? PAC:26998602
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-3781 Populus trichocarpa pathologic  
Ptrichocarpa PWY-7279 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.003G162200 0.5kb upstream 0.5kb upstream 3670   true Chr03: 17306071-17309740 Populus trichocarpa
Potri.003G162200 0.5kb upstream 0.5kb upstream 500   false Chr03: 17309241-17309740 Populus trichocarpa
Potri.003G162200 0.5kb downstream 0.5kb downstream 3670   true Chr03: 17305571-17309240 Populus trichocarpa
Potri.003G162200 0.5kb downstream 0.5kb downstream 500   false Chr03: 17305571-17306070 Populus trichocarpa
Potri.003G162200 1.0kb upstream 1.0kb upstream 4170   true Chr03: 17306071-17310240 Populus trichocarpa
Potri.003G162200 1.0kb upstream 1.0kb upstream 1000   false Chr03: 17309241-17310240 Populus trichocarpa
Potri.003G162200 1.0kb downstream 1.0kb downstream 4170   true Chr03: 17305071-17309240 Populus trichocarpa
Potri.003G162200 1.0kb downstream 1.0kb downstream 1000   false Chr03: 17305071-17306070 Populus trichocarpa
Potri.003G162200 2.0kb upstream 2.0kb upstream 5170   true Chr03: 17306071-17311240 Populus trichocarpa
Potri.003G162200 2.0kb upstream 2.0kb upstream 2000   false Chr03: 17309241-17311240 Populus trichocarpa
Potri.003G162200 2.0kb downstream 2.0kb downstream 5170   true Chr03: 17304071-17309240 Populus trichocarpa
Potri.003G162200 2.0kb downstream 2.0kb downstream 2000   false Chr03: 17304071-17306070 Populus trichocarpa
Potri.003G162200 5.0kb upstream 5.0kb upstream 8170   true Chr03: 17306071-17314240 Populus trichocarpa
Potri.003G162200 5.0kb upstream 5.0kb upstream 5000   false Chr03: 17309241-17314240 Populus trichocarpa
Potri.003G162200 5.0kb downstream 5.0kb downstream 8170   true Chr03: 17301071-17309240 Populus trichocarpa
Potri.003G162200 5.0kb downstream 5.0kb downstream 5000   false Chr03: 17301071-17306070 Populus trichocarpa
Potri.003G162200 10.0kb upstream 10.0kb upstream 13170   true Chr03: 17306071-17319240 Populus trichocarpa
Potri.003G162200 10.0kb upstream 10.0kb upstream 10000   false Chr03: 17309241-17319240 Populus trichocarpa
Potri.003G162200 10.0kb downstream 10.0kb downstream 13170   true Chr03: 17296071-17309240 Populus trichocarpa
Potri.003G162200 10.0kb downstream 10.0kb downstream 10000   false Chr03: 17296071-17306070 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.362     High  
cufflinks 12.798     High  
cufflinks 57.864     High High
cufflinks 34.485     High  
cufflinks 12.063     High Low
cufflinks 8.611       Low
cufflinks 20.715     High  
cufflinks 17.652     High  
cufflinks 31.335     High  
cufflinks 14.387     High  
cufflinks 32.641     High  
cufflinks 22.5     High  
cufflinks 16.322     High  
cufflinks 13.005     High  
cufflinks 17.926     High  
cufflinks 25.549     High  
cufflinks 10.35     High Low
cufflinks 17.909     High  
cufflinks 84.385     High High
cufflinks 19.21     High  
cufflinks 18.62     High  
cufflinks 36.917     High  
cufflinks 51.679     High High
cufflinks 17.663     High  
cufflinks 14.673        
cufflinks 12.445        
cufflinks 11.986        
cufflinks 12.229        
cufflinks 15.215        
cufflinks 14.026        

0 Strain