Gene : Potri.006G118400 P. trichocarpa v3.0
Defline:  (1 of 1) 4.3.1.19 - Threonine ammonia-lyase / Threonine dehydratase Genomic Order:  1184
Name:  ? Potri.006G118400 Secondary Identifier:  ? PAC:27008624
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa BRANCHED-CHAIN-AA-SYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa ILEUSYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-3001 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.006G118400 0.5kb upstream 0.5kb upstream 5135 true Chr06: 9336398-9341532 Populus trichocarpa
Potri.006G118400 0.5kb upstream 0.5kb upstream 500 false Chr06: 9341033-9341532 Populus trichocarpa
Potri.006G118400 0.5kb downstream 0.5kb downstream 5135 true Chr06: 9335898-9341032 Populus trichocarpa
Potri.006G118400 0.5kb downstream 0.5kb downstream 500 false Chr06: 9335898-9336397 Populus trichocarpa
Potri.006G118400 1.0kb upstream 1.0kb upstream 5635 true Chr06: 9336398-9342032 Populus trichocarpa
Potri.006G118400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 9341033-9342032 Populus trichocarpa
Potri.006G118400 1.0kb downstream 1.0kb downstream 5635 true Chr06: 9335398-9341032 Populus trichocarpa
Potri.006G118400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 9335398-9336397 Populus trichocarpa
Potri.006G118400 2.0kb upstream 2.0kb upstream 6635 true Chr06: 9336398-9343032 Populus trichocarpa
Potri.006G118400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 9341033-9343032 Populus trichocarpa
Potri.006G118400 2.0kb downstream 2.0kb downstream 6635 true Chr06: 9334398-9341032 Populus trichocarpa
Potri.006G118400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 9334398-9336397 Populus trichocarpa
Potri.006G118400 5.0kb upstream 5.0kb upstream 9635 true Chr06: 9336398-9346032 Populus trichocarpa
Potri.006G118400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 9341033-9346032 Populus trichocarpa
Potri.006G118400 5.0kb downstream 5.0kb downstream 9635 true Chr06: 9331398-9341032 Populus trichocarpa
Potri.006G118400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 9331398-9336397 Populus trichocarpa
Potri.006G118400 10.0kb upstream 10.0kb upstream 14635 true Chr06: 9336398-9351032 Populus trichocarpa
Potri.006G118400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 9341033-9351032 Populus trichocarpa
Potri.006G118400 10.0kb downstream 10.0kb downstream 14635 true Chr06: 9326398-9341032 Populus trichocarpa
Potri.006G118400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 9326398-9336397 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.072       Low
cufflinks 7.501        
cufflinks 6.518        
cufflinks 6.794        
cufflinks 9.811        
cufflinks 5.917        
cufflinks 7.834        
cufflinks 4.197       Low
cufflinks 5.548        
cufflinks 11.062     High High
cufflinks 4.522       Low
cufflinks 9.544     High  
cufflinks 8.78        
cufflinks 12.208     High High
cufflinks 13.554     High High
cufflinks 6.734        
cufflinks 4.33       Low
cufflinks 7.064        
cufflinks 5.781        
cufflinks 17.246     High High
cufflinks 9.14     High  
cufflinks 8.453        
cufflinks 7.938        
cufflinks 10.056     High  
cufflinks 23.019       Low
cufflinks 27.094     High  
cufflinks 34.822     High High
cufflinks 26.174        
cufflinks 29.368     High  
cufflinks 24.476        

0 Strain