Gene : Potri.006G219900 P. trichocarpa v3.0
Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Genomic Order:  2199
Name:  ? Potri.006G219900 Secondary Identifier:  ? PAC:27008098
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-7528 Populus trichocarpa pathologic  
Ptrichocarpa PWY-7270 Populus trichocarpa pathologic  
Ptrichocarpa PWY-4361 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.006G219900 0.5kb upstream 0.5kb upstream 4002 true Chr06: 23227974-23231975 Populus trichocarpa
Potri.006G219900 0.5kb upstream 0.5kb upstream 500 false Chr06: 23227974-23228473 Populus trichocarpa
Potri.006G219900 0.5kb downstream 0.5kb downstream 4002 true Chr06: 23228474-23232475 Populus trichocarpa
Potri.006G219900 0.5kb downstream 0.5kb downstream 500 false Chr06: 23231976-23232475 Populus trichocarpa
Potri.006G219900 1.0kb upstream 1.0kb upstream 4502 true Chr06: 23227474-23231975 Populus trichocarpa
Potri.006G219900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 23227474-23228473 Populus trichocarpa
Potri.006G219900 1.0kb downstream 1.0kb downstream 4502 true Chr06: 23228474-23232975 Populus trichocarpa
Potri.006G219900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 23231976-23232975 Populus trichocarpa
Potri.006G219900 2.0kb upstream 2.0kb upstream 5502 true Chr06: 23226474-23231975 Populus trichocarpa
Potri.006G219900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 23226474-23228473 Populus trichocarpa
Potri.006G219900 2.0kb downstream 2.0kb downstream 5502 true Chr06: 23228474-23233975 Populus trichocarpa
Potri.006G219900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 23231976-23233975 Populus trichocarpa
Potri.006G219900 5.0kb upstream 5.0kb upstream 8502 true Chr06: 23223474-23231975 Populus trichocarpa
Potri.006G219900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 23223474-23228473 Populus trichocarpa
Potri.006G219900 5.0kb downstream 5.0kb downstream 8502 true Chr06: 23228474-23236975 Populus trichocarpa
Potri.006G219900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 23231976-23236975 Populus trichocarpa
Potri.006G219900 10.0kb upstream 10.0kb upstream 13502 true Chr06: 23218474-23231975 Populus trichocarpa
Potri.006G219900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 23218474-23228473 Populus trichocarpa
Potri.006G219900 10.0kb downstream 10.0kb downstream 13502 true Chr06: 23228474-23241975 Populus trichocarpa
Potri.006G219900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 23231976-23241975 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.148       Low
cufflinks 2.709        
cufflinks 2.486        
cufflinks 2.86        
cufflinks 3.092        
cufflinks 3.507       High
cufflinks 3.634       High
cufflinks 1.905        
cufflinks 3.725       High
cufflinks 2.054        
cufflinks 2.772        
cufflinks 1.332       Low
cufflinks 2.598        
cufflinks 2.889        
cufflinks 2.771        
cufflinks 3.159        
cufflinks 1.643       Low
cufflinks 2.349        
cufflinks 2.143        
cufflinks 1.381       Low
cufflinks 2.88        
cufflinks 2.798        
cufflinks 2.399        
cufflinks 2.616        
cufflinks 35.336     High  
cufflinks 32.576     High  
cufflinks 44.965     High  
cufflinks 47.34     High High
cufflinks 48.818     High High
cufflinks 30.912     High  

0 Strain